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40 protocols using vancomycin

1

Pediatric VRE Colonization Surveillance

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During the study period, 1290 patients were admitted in the PICU, out of which 1018 patients stayed >48 h. As calculated sample size was 196, convenient sampling was carried out to achieve the sample size. Rectal swabs were collected after 48 h of admission to PICU and inoculated onto bile esculin sodium azide agar containing 6mg/L vancomycin (Himedia laboratories, Mumbai, India).[5 (link)] Black/brown colonies were presumptively identified as Enterococcus and confirmed to species level based on Facklam and Collins standard biochemical tests.[24 (link)] Minimum inhibitory concentration (MIC) of vancomycin and teicoplanin was determined by agar dilution method for all the enterococcal isolates grown on BEA as per the Clinical and Laboratory Standard Institute guidelines.[25 ] MIC of ≥32 was considered as resistant to both vancomycin and teicoplanin. The antimicrobial susceptibility of the isolates to other antibiotics, namely, ampicillin, high-level gentamicin, tetracycline, and linezolid was also performed by Kirby-Bauer disc diffusion method.[26 ] Association of VRE colonization with demographic features of the patients and various risk factors for VRE colonization were assessed based on previous studies.
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2

Vancomycin-Resistant Enterococcus Surveillance

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All samples from inpatient wards, sent for culture to the Department of Microbiology, were selected according to the criteria proposed in the study methodology. For blood culture, paired samples were inoculated in blood culture bottles (BacT/Alert FA Plus for adults and PF Plus for pediatric patients) and cultured in BacT/Alert systems (bioMérieux, France) for a period of at least 7 days. For urine culture, colony counts of ≥105 colony-forming units per ml (CFU/ml) were evaluated. Selected samples were cultured in conventional media and screened for presumptive vancomycin resistance on a VRE screen agar and prepared using bile esculin azide agar supplemented with 6% (6 μg/ml) vancomycin (HiMedia Laboratories, Mumbai, India).[4 9 (link)10 ] Identification of Enterococcus species by conventional biochemical reactions (growth on potassium tellurite agar, 6.5% sodium chloride (NaCl) broth, 1% sugar fermentation tests, esculin hydrolysis, and arginine hydrolysis) and results interpreted by the identification scheme proposed by Facklam and Collins.[2 (link)3 11 (link)]
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3

Enterococcal Resistance Profiling in ICU

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Stool samples were collected as early as within 2 days of admission in the ICU irrespective of their previous hospitalization status and then weekly until discharge from all the patients and transported to the microbiology laboratory. Samples were then plated directly on bile esculin azide agar (BEAA) with and without 6 μg/ml vancomycin (HiMedia, Mumbai) and also following enrichment in BEA broth with 6 μg/ml vancomycin for 24 h at 37°C. All the plates were incubated aerobically at 37°C for 48 h. Four to five colonies with dark brown halo morphologically resembling enterococcal colonies were selected and further tested by Gram's stain, PYRase test and growth in 6.5% NaCl. Speciation of the isolates was done based on standardized biochemical classification.[4 (link)] Enterococcus fecalis ATCC 29212 and previously characterized vanA E. faecium strains were taken as controls. Minimum inhibitory concentration (MIC) for vancomycin and teicoplanin were determined by agar dilution method.[5 ] Detection of the resistant determinants were done by polymerase chain reaction amplification of vanA, vanB, and vanC genes.[6 ]
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4

Antibiotic Susceptibility Testing of Yeast Isolates

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Isolated yeast strains were tested against 30 antibiotics with different modes of actions such as amikacin (MD001), amoxycillin (MD002), azithromycin (MD004), benzyl penicillin (MD062), cefalexin (cephalexin) (MD014), cefepime (MD070), cefotaxime (cephotaxime) (MD064), chloramphenicol (MD016), ciprofloxacin (MD017), erythromycin (MD022), gemifloxacin (MD076), gentamicin (MD061), kanamycin (MD026), levofloxacin (MD027), methicillin (MD031), moxifloxacin (MD033), neomycin (MD036), norfloxacin (MD038), ofloxacin (MD039), pefloxacin (MD040), polymyxin-B (MD043), rifampicin (MD045), roxithromycin (MD046), streptomycin (MD048), sulphadiazine (MD050), sulphamethizole (MD052), teicoplanin (MD055), vancomycin (MD060), tetracycline (MD056), meropenem (SD727) (Himedia, Mumbai, India) with standard antibiotic concentration previously determined by testing against pathogens [17 (link)]. The diameter of the inhibition zone was measured after 48 h of incubation at 30 °C.
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5

Antibiotic Resistance Profiling of Strains

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Antibiotic resistance was examined using the disc diffusion method and commercially available antibiotics (streptomycin; Scientific Laboratory Supplies, ciprofloxacin; DAILYMED, vancomycin; HIMEDIA, metronidazole; Accord-UK-Ltd, ampicillin; Cdila Pharma, chloramphenicol; FLINN SCIENTIFIC, kanamycin; Fischer Scientific, erythromycin; FLINN SCIENTIFIC, penicillin; REYOUNG PHARMACEUTICALS; and tetracycline; Fischer Scientific). The isolated strains were inoculated in MRS broth and incubated anaerobically at 37 °C for 24 h. The antibiotics discs were placed on already streaked plates to check the resistance of the strains.
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6

Antibiotic Source Verification for Bacterial Testing

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The antibiotics for preparation of test plates were procured from the suppliers shown in parentheses: Amikacin, Ampicillin, Cefotaxime, Ceftriaxone, CiprOfloxacin, Gentamicin, Nitrofurantoin, Norfloxacin, Piperacillin/Tazobactam, Ofloxacin, (Sigma-Aldrich, USA), Amoxycillin/clavulanate (GlaxoSmithKline; Thane, India), Ceftazidime (VHB; Mumbai, India), Cefepime (Biocon; Bengaluru, India), Cefixime (GlaxoSmithKline; Thane, India), Colistin (Cipla; Pune, India), Erythromycin (Himedia; Mumbai, India), Imipenem (MSD; Mumbai, India), LevOfloxacin (Alkem; Chennai, India), Meropenem (Cipla; Pune, India), Tetracycline (GlaxoSmithKline; Thane, India), Tigecycline (Natco; Chennai, India), Vancomycin (Himedia; Mumbai, India).
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7

Hemolytic Activity and Antibiotic Susceptibility of LAB

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We assessed the hemolytic activities of LAB strains showing antagonistic activity during initial screening by the presence of α/α (a small zone of greenish-brownish discoloration of the medium, indicating reduction of hemoglobin to methemoglobin), β/β (clear, colorless or light yellow zone surrounding the colonies depicting total lysis of red blood cells), and γ/γ (with no change observed in the medium) hemolysis following the protocol of Maragkoudakis et al. (2006) (link). In the antibiotic susceptibility test, we examined promising screened and characterized LAB isolates using the agar disc diffusion method (Bauer et al., 1966) (link). Twelve antibiotics were tested (Hi-Media): penicillin G (2 units), ceftriaxone (30 µg), ampicillin (25 µg), vancomycin (30 µg), oxacillin (1 µg), streptomycin (10 µg), chloramphenicol (30 µg), gentamicin (10 µg), erythromycin (10 µg), tetracycline (10 µg), novobiocin (30 µg), and ciprofloxacin (10 µg). Isolates were categorized as sensitive (≥21 mm), intermediate (16-20 mm), or resistant (≤15 mm) (Liasi et al., 2009) . The multiple antibiotics resistance (MAR) index was determined for each probiotic strain as previously described by Ngwai et al. (2011) .
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8

Antibiotic Susceptibility Profiling of Isolates

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The isolates were tested against 24 antibiotics using the Kirby-Bauer disc diffusion technique [45 (link)]. Antibiotic discs were placed on freshly prepared lawns of each isolate on Mueller-Hinton agar (MHA) plates and incubated at 37 °C for 24–48 hours. The diameter of the inhibition zones was measured, and the strains were classified following the standard antibiotic disc chart. Standard antibiotic discs were procured from ‘HiMedia’ which includes gentamicin (120 μg), vancomycin (30 μg), tetracycline (30 μg), polymixin-B (300 μg), kanamycin (30 μg), ofloxacin (5 μg), co-trimoxazole (25 μg), meropenem (10 μg), ceftriaxone (30 μg), clindamycin (2 μg), ampicillin (10 μg), norfloxacin (10 μg), rifampicin (5 μg), amikacin (30 μg), penicillin-G 10μg), cefdinir (5 μg), ciprofloxacin (5 μg), azithromycin (15 μg), methicilin (5 μg), and streptomycin (10 μg).
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9

Bacteriological Analysis and Antibiotic Susceptibility

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The swabs collected were directly inoculated in duplicate on blood agar, (Oxoid) Mac Conkey agar and Muller Hinton agar (Oxoid). The pairs of inoculated media were incubated aerobically at 37 °C for 24 h and then examined for bacteria growth according to standard protocol [14 ]. The positive culture growths were examined for colony characteristics, Gram-reaction and biochemical characteristics as described by Cheesbrough (2000) [14 ]. The biochemical characteristics tested were: (i) catalase, (ii) coagulase, (iii) oxidase, (iv) hemolysis, (v) sugar fermentation, (vi) indole production, (vii) citrate utilization, (viii) urease activity, (ix) triple sugar iron and (x) hydrogen sulphide production.
Purified bacterial isolates were subjected to drug susceptibility tests using the Kirby Bauer disc diffusion method [14 ]. Commercially available antibiotic discs that were used include: ciprofloxacin, norfloxacin, gentamycin, erythromycin, clindamycin, cephalexin, co-trimoxazole, tetracycline, cefoxitin, ampicillin, vancomycin and chloramphenicol (Hi Media Laboratories Pvt. Ltd, India). These antibiotics were chosen based on the type of microorganisms frequently isolated and their availability at University Teaching Hospital.
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10

Antimicrobial Susceptibility of Clinical Isolates

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We performed antimicrobial susceptibility test of the isolates by the KirbyBauer method adhering to clinical and laboratory standard institute (CLSI) guidelines against following antimicrobial discs: amikacin (10 µg), cefalexin (30 µg), ceftriaxone (30 µg), ofloxacin (5 µg), vancomycin (30 µg), linezolid (30 µg), and teicoplanin (30 µg) (HiMedia, India). We checked the quality of all the discs by testing them against Staphylococcus aureus ATCC 25923 before use.
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