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126 protocols using genios

1

Luminescence Growth Curve Assay

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Overnight LBS cultures of each strain were pelleted, washed once, and resuspended in 1 ml of the intended growth medium. Luminescence growth curves were performed in 20 ml SWT in flasks shaking at 225 rpm; periodic 1-ml and 300-μl aliquots were taken for luminescence and OD600 readings on a luminometer (Turner Designs) and Tecan Genios plate reader, respectively. Growth curves were performed in 1.2 ml growth medium and monitored in the Tecan Genios plate reader with continuous shaking at high speed.
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2

Spectrophotometric Quantification of DNA

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Estimation of DNA concentration and purity was performed using a spectrophotometer (BioSpectrometer® basic, Eppendorf AG, Hamburg, Germany) at 260 and 280 nm. For a quantitative determination of DNA, the fluorescence signal was measured after addition of the DNA intercalation dye PicoGreen (Quant-iT™ PicoGreen® dsDNA Reagent, Thermo Fisher Scientific Inc., Waltham, MA, USA) against a λ-DNA (Thermo Fisher Scientific Inc., Waltham, MA, USA) standard curve using a microtiter plate reader (GENios, TECAN Group Ltd., Männedorf, Switzerland).
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3

Detection of Serum Anti-MOG Antibodies

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Serum MOG35–55-specific antibody was detected by enzyme-linked immunosorbent assay (ELISA). The 96-well microplates were pre-coated overnight with 10 µg/mL MOG35–55 peptide at 4°C and blocked with 3% bovine serum albumin in PBS containing 0.1% Tween-20 (PBST) for 1 h. The plates were subsequently incubated with 100 µL mouse serum (1/100 dilution) at 37°C for 1 h. Plates were washed three times with PBST and the appropriate horseradish peroxidase-conjugated goat anti-mouse IgG was added to detect the bound Ig for an hour at 37°C. After washing, the plates were colorized with tetramethylbenzidine and absorbance was read at 450 nm. The cutoff value was defined as the mean optical density value of control samples plus two SDs.
Chemiluminescent enzyme-linked immunosorbent assay (CLISA) was used to detect MOG35–55-specific antibody in cell culture supernatant because of the anticipated low titer of the antibody. This procedure was similar to conventional ELISA except for the substrate solution. After adding the Lumigen PS-atto substrate (Lumigen, Inc., Southfield, MI, USA), the chemiluminescence intensity was monitored using a luminescence reader (GENios, Tecan Group Ltd., Männedorf, Switzerland). The test for repeatability of this method was presented in Figure S4 in Supplementary Material.
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4

Measuring Adenovirus Transduction Efficiency

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The transduction efficiencies of tagged adenoviruses in CHO cells after treatment with CAP were measured by determining the reporter gene (luciferase) expression levels. 26 h after infection luciferase activity was measured (Fig 1C) with the Nano-Glo assay system (Promega GmbH, Mannheim, Germany). The luminescence was detected quantified using a respective plate reader (Genios, Tecan Group Ltd, Männedorf, Switzerland).
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5

ThT Assay for Amyloid Fibrils

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ThT assays were performed in black 96 well microplates (#437112, Nunc, ThermoFisher Scientific, Roskilde, Denmark). The fibril formation kinetics were followed by measuring every plate well at 440 nm excitation and 480 nm emission wavelengths every 30 min with a Tecan Genios plate reader (Tecan Group Ltd., Männedorf, Switzerland) (Gade Malmos et al., 2017 (link)). To remove aggregates and oligomers and prevent seed formation during the assay, monomer isolation was performed prior to the experiment by ultracentrifugation in an Optima MAX-E ultracentrifuge, (Beckman, Krefeld, Germany). Assays were performed in a final volume of 250 µL per well with 20 µM protein 10 µM ThT in PBS buffer (pH 7.4) containing 0.5 mM SDS to support fibril formation (Kihara et al., 2005 (link); Nokwe et al., 2015 (link); Yamamoto et al., 2004 (link)) and 0.05% NaN3. Microplates were covered with a Crystal Clear PP sealing foil (HJ-Bioanalytik GmbH, Erkelenz, Germany) and kept in the plate reader at 37°C under continuous orbital shaking of 180 rpm.
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6

Cell Apoptosis and Proliferation Assay

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For the cell apoptosis assay, the astrocytes (SVGA) and microglia (HMC3) were cultured on 96-well plates (7500 cells/100 µL medium/well). The cells were treated under OGD conditions for 24 h, and subsequently apoptosis was analyzed using the Caspase-Glo® 3/7 Assay (Cat. G8090, Promega, Madison, WI, USA) according to the manufacturer’s instructions. The plates were read using a Tecan GENios microplate reader (Tecan Group Ltd., Männedorf, Switzerland). Proliferation was determined by counting the cells seeded into 6-well plates (80,000 cells/well) using the TC20 Automated Cell Counter (Bio-Rad, Feldkirchen, Germany) after the OGD treatment. Proliferation was calculated as an n-fold amount of the initially seeded cell number.
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7

Intracellular ROS Measurement Protocol

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Intracellular ROS levels were determined using 2′,7′–dichlorofluorescein diacetate (DCFDA) assay. After respective treatment for the indicated period, the cells were incubated with DCFDA (10 μΜ) in complete medium for 30 min at 37 °C. As a positive control, 1 mM H2O2 diluted in PBS was added. The emitted fluorescence was read in a microplate spectrophotometer plate reader (GENios, TECAN Group, Maennedorf, Switzerland) at Ex/Em 502/535 nm.
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8

Caspase-3/7 Activity Assay Protocol

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The caspase-3/7 activity was evaluated using a Caspase-Glo-3/7 assay kit (Promega, USA) as per the manufacturer’s protocol. In brief, 8000 cells were seeded in each well of a 96-well plate and incubated for 24 h. After that, cells were treated with different concentrations of free drugs and free drug combination and drug-loaded nanoparticles, and incubated for 24 h. After 24 h, supernatant and all media were removed and washed twice with PBS. The caspase activity was measured by adding the assay reagent in a proportion of 1:1 to each well. The luminescence signal was measured using a Tecan GENios microplate reader (Tecan Group Ltd, Switzerland) after incubating for 30 min post reagent addition. The experiments were performed in triplicate.
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9

Yeast Growth Inhibition by Eu(III) Ions

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BY4743 background diploid yeast deletion strains (Life Technologies, Carlsbad, CA) were grown in yeast extract-peptone-dextrose media (YPD, containing 2% peptone, 2% dextrose, and 1% yeast extract) with continuous shaking (200 rpm) at 30 ˚C.
Wild-type yeast was grown to mid-log phase and subsequently diluted down to 0.0165 optical density at 600 nm (OD600). Different Eu(III) treatments (ranging from 0 to 0.5 mM) were added to diluted yeast strains that were transferred into different wells in clear 96-well plates (Grenier Bio-One, Monroe, NC). Well plates containing the yeast were incubated at 30 ˚C with continuous 200 rpm shaking inside a Tecan Genios microplate reader (Tecan Group Ltd., Männedorf, Switzerland). OD600 of each well was measured every 15 min for a period of 24 h. IC5, IC10 and IC20 concentrations (0.092, 0.108 and 0.131 mM, respectively) were calculated using the area under the curve.
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10

Evaluating Metal Chelating Capacity

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The metal chelating activities of WGE and F-WGE referred to the method of Mariana et al. (20 (link)) with a slight modification. The WGE and F-WGE were mixed at 1, 5, 10, 20, and 50 μg/mL with 200 μL of 0.4 μM CuSO4 solution. Then, the mixed solution was added 100 μL of 0.05 μM calcein solution. The fluorescence intensity of the final mixed solution was measured with the fluorescence reader (GENios; Tecan Trading AG, Salazburg, Austria) at an excitation wavelength of 485 nm and an emission wavelength of 535 nm. The percentage of metal chelating capacity was calculated as a percentage versus control.
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