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23 protocols using rxi 5ms column

1

Synthesis and Characterization of Novel Organic Compounds

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All reactions were performed under an argon atmosphere unless otherwise stated. Commercially available starting materials were generously provided by Apollo Scientific and used without further purification. Tetrahydrofuran (THF) was freshly distilled from Na/benzophenone. Toluene for the Suzuki–Miyaura cross-coupling reactions was redistilled prior to use. Some of the compounds described in this article are known and have been previously reported; for compounds 1a, 2a, 11a, 12a, 1b, 2b, see reference [7 (link)], for compound 6a—[25 (link)], 8a—[9 (link)] and 9a—[17 (link)].
NMR spectra were recorded on a Bruker Avance III spectrometer (400 MHz for 1H NMR and 100 MHz for 13C NMR). Chemical shifts δ are reported with respect to the residual solvent peak and are given in ppm. GC-MS analyses were performed on a Shimadzu GCMS-QP2010 ultra plus system using a Restek Rxi-5 ms column (30 m, 0.25 mmID). Reactions were monitored by TLC using Merk TLC silica gel 60 F254 plates and visualized using UV light (254 nm) or KMnO4 stain. Column chromatography was performed on ZEOprep 60 silica gel (35–70 µm, Apollo Scientific). Melting points were measured in open capillaries using a Mettler Toledo FP90 central processor equipped with Mettler Toledo FP81HT MBC cell.
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2

Fatty Acid Profiling of Pork Meat

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Extraction of lipids for FA analysis was performed with chloroform/methanol (2:1 v/v), and FA methyl esters (ME) were prepared as described by Pérez-Palacios et al. [43 (link)]. The FA composition of pork meat was determined using gas chromatograph GC-2010 Plus (Shimadzu Corp., Kyoto, Japan) equipped with a mass spectrometer GCMS-QP2010 (Shimadzu Corp.). Separation was carried out on an Rxi-5 ms column (30 m length, 0.25 mm ID and 0.25 μm df (Restek, Bellefonte, PA, USA). The mass spectrometer was operated at full scan mode, and the analyte was injected in split mode at a 1:60 split ratio. The carrier gas was helium at a flow rate of 0.91 mL/min. The FAME concentration was determined using a calibration curve, and results were expressed as percentages of the total FAME concentration in the sample. The calibration curve was prepared using the standard Supelco 37 Component FAME Mix (Merck & Co., Inc., Kenilworth, NJ, USA).
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3

Characterization of Organic Compounds

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1H and 13C NMR experiments were performed in D2O or CDCl3 at 600 MHz for 1H and 151 MHz for 13C nuclei on a Bruker Avance III Ultrashield 600. 2D NOE experiments were performed on a Bruker Avance-III-800 console equipped with a Bruker 18.8 T/54 mm Ascend Magnet at 25 °C. Preparative HPLC was conducted using an Agilent 1260 Infinity II LC equipped with an Agilent Eclipse XDB-C18 column (250 mm × 21.2 mm, 7 μm). Analytical HPLC was performed on an Agilent 1260 Infinity II system equipped with an Agilent 5 HC-C18(2) column (150 × 4.6 mm, 5 μm). GC-MS experiments were run on a ThermoScientific Trace GC Ultra spectrometer equipped with an Rxi-5MS column (Restek Corp., 30 m × 0.25 mm i.d., 0.25 μm df). The injection temperature was 250 °C, electron ionization was performed with 70 eV, ion source temperature was 250 °C, transfer line temperature was 280 °C, and mass scan range was from m/z 30–500 at 1500 μ s−1. The program held at 50 °C for 3 min, increased the temperature at a rate of 20 °C min−1 up to 300 °C, and then was maintained at 300 °C for 3 min. Optical rotations were measured on a JASCO P-1010 polarimeter.
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4

GC-QTOF Analysis of Chemical Samples

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A glass microvial containing 3 mg of sample was placed inside the TSP attached to an Agilent 7890B gas chromatograph equipped with a Restek Rxi-5 ms column (30 m × 320 μm × 0.25 μm). The mass spectrometer was an Agilent 7250 GC/Q‑TOF equipped with a low-energy-capable EI source (70 eV). The TSP was set at 300 °C and the oven temperature set at 40 °C for one minute, increasing by 20 °C/minute until 320 °C where it was held for five minutes. Helium was used as a carrier gas, at 1.43L/min flow rate and 8.7psi pressure. The equilibration time was 0.5 min and the sample injection was splitless. The mass range was 50 to 650 m/z. All samples were run in triplicate with blanks added between samples. Data analysis was performed using Agilent Mass Hunter Qualitative Analysis 10.0 with compound assignments using NIST Library 17. Only compounds with a match factor (MF) and reverse match factor (RMF) > 700 and where the molecular ion is present with an accuracy mass error below 50 ppm were shortlisted.
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5

Comprehensive Aroma Analysis using GC-MS

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Aroma constituents were analyzed using a Pegasus 4D GC×GC-TOF mass spectrometer (LECO Corp., St. Joseph, MI, USA). The first dimension (1-D) was a non-polar Rxi-5MS column (30 m × 250 μm × 0.25 μm) (Restek Corp., Bellefonte, PA, USA) and the second (2-D) was a moderate polar Rxi-17Sil MS column (1.9 m × 100 μm × 0.1 μm) (Restek Corp.) The GC-O analysis was conducted using a 7890B-5977B GC-MS system (Agilent Technologies Inc., Santa Clara, CA, USA) equipped with an ODP-3 Olfactory Detection Port (Gerstel GmbH & Co. KG, Mülheim an der Ruhr, Germany).
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6

GC-MS Analysis of Derivatised Samples

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Derivatised samples were analysed on an Agilent 5977B MSD/Agilent 8860 GC system equipped with a Restek Rxi-5-ms column (30-m length × 0.25-mm internal diameters (id); 0.25 μm film). Every sample (1 µL) was injected into the inlet at a split ratio of 1:1. Using helium as the carrier gas, the chromatographic method was run at a constant flow rate of 1 mL/min, ramping from 20 °C/min to 320 °C before holding at 320 °C for 5 min. The transfer line, the quadrupole temperature, and the MS source were set at 290, 250, and 150 °C, respectively, in electron ionisation mode at −70 eV. Mass spectrometry data were collected at m/z 50–600 at a scan rate of 20 spectra/s after a 5.4 min solvent delay.
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7

Quantifying Ursolic Acid via GC/MS

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Gas chromatography mass spectroscopy (GC/MS) was used to determine
ursolic acid (UA) content of the acetone and aqueous extracts by adapting
methods initially developed by Caligiani et al. (Caligiani et al. 2013 (link)). UA quantification was performed via the
standard addition as described by Saxberg et al. (Saxberg & Kowalski, 1979 ). The instrument used
was an Agilent 6890 GC with 5973N mass spectrometer operated in electron impact
mode with a Restek Rxi-5ms column (30m × 0.25mm 0.25μm,
Bellefonte, PA). Briefly, extracts (100 μL) were spiked with a range of
UA masses (0, 10, 20, 50, and 100 μg) then evaporated (acetone) or
lyophilized (aqueous), followed by derivatization in 1 mL 1:1 DMF:BSTFA (1%
TMCS) at 90 °C for 1 hr. Extracts were injected (2 μL) in split
mode (10:1) with helium carrier gas. Calibration was performed on extracted ion
chromatograms (m/z = 320) at retention time = 57.1 min.
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8

Comprehensive GC-TOF/MS Analysis of Compounds

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Gas chromatography-time of flight mass spectrometry (GC-TOF/MS) was performed using the Agilent 7890B GC (Agilent Technologies, USA) and Pegasus (BT) TOF-MS system (Leco Corporation, USA) equipped with an Rxi-5ms column (30m×0.25mm×0.25μm, RESTEK, USA), stationary phase 5% diphenyl-95% dimethyl polysiloxane. High-purity helium (99.999%) was used as the carrier gas at a flow rate of 1.20 mL/min -1 . Samples were injected in splitless mode at 250°C. The chromatographic conditions were: initial temperature 50°C, 1 minute isothermal, 25°C/min up to 175°C, 4°C/min up to 250°C, 11.25 minutes isothermal. MS parameters: electron impact ionization source temperature (EI, 70 eV) was set at 250°C; scan range 40/630 m/z, with an extraction frequency of 30 kHz. The chromatograms were acquired in TIC (total ion current) mode. Mass spectral assignment was performed by matching with NIST MS Search 2.2. Libraries, implemented with the MoNa Fiehns Libraries.
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9

Detecting Lipopolysaccharides in MP-PSC

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The existence of lipopolysaccharides (LPS) in MP-PSC (2 mg) was checked by means of the detection of 3-hydroxy fatty acids, as their characteristic constituents in the form of acetylated fatty acid methyl esters, on a GC-EI/MS-QP 2010 system (Shimadzu, Kyoto, Japan), equipped with a Restek Rxi-5MS column (30 m length, 0.25 mm i.d., 0.25 m film thickness, Restek Corporation, Bellefonte, PA, USA) in a SIM mode. LPS of E. coli (serotype O111:B4) was used as a calibration standard, and the intensity of the ion with 257 m/z, obtained from the acetylated ester of 3-hydroxy tetradecanoic acid, was used for the calculations [51 (link),55 (link)]. The injection volume was 1 μL (split ratio of 1:10). The injector temperature was 250 °C, and the oven was set at 50 °C, then held for 2 min, heated to 90 °C (20 °C/min) and held for 1 min, then heated to 280 °C with a step of 5 °C/min, and held for 2 min. Data were analyzed by GC–MS solution software, version 2.10 (Shimadzu, Kyoto, Japan).
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10

Quantitative Analysis of PBDEs

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BDEs were detected and quantified using an Agilent gas chromatograph-mass spectrometer (GC6890-MSD5975) equipped with an Rxi-5 ms column (15 m × 0.25 mm × 0.25 μm; Restek, Bellefonte, PA, United States) as previously described (Lee and He, 2010 (link)). Briefly, BDEs in cultures were extracted with isooctane (1:1, v/v) using deca-bromobiphenyl (DBB) as an internal standard. The oven temperature was initially set at 110°C, increased to 310°C at a rate of 15°C/min, and held at 310°C for 3 min. Calibration curves of the spiked congeners (BDE-47, BDE-183) were quantified using serum bottles containing defined DCB1 medium with defined amounts. Considering that some degradative metabolites were commercially unavailable, the standard curves of the degradative metabolites were established using the average peak area of congeners in the same homolog group. A total of six standard curves (including penta-, tetra-, tri-, di-, mono-diphenyl ether, and diphenyl ether) were established; the standard deviation of each curve was within 20%. The bromine removal amount was calculated by the deduction of the bromine amounts of all detected PBDE congeners at a given time from the bromine amounts on day 0.
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