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10 protocols using dab substrate kit

1

Immunohistochemical Analysis of Testicular Apoptosis

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Testes section slides were deparaffinized with xylene and rehydrated in graded ethanol before being washed with distilled water for 5 min twice. The sections were treated with 3 % H2O2 to block endogenous peroxidase activity. Then, they were heated in (0.01 M) citrate buffer at 120 °C for 20 min in a microwave oven to retrieve antigen. The sections were cooled and washed three times with 0.01 M PBS, pH 7.2. Furthermore, they are blocked with goat normal serum in 0.01 M PBS for 30 min at room temperature. The antiserum-treated sections were incubated overnight at 4 °C with polyclonal antibodies against CASP3 and CLDN1, diluted at 1:500 and 1:1000, respectively. The second antibody (biotinylated anti-rabbit IgG) was added for 30 min, and then washed with PBS. After that, the horseradish peroxidase was added for 30 min. The bindings of the antibodies were visualized using the liquid DAB Substrate Kit (using diaminobenzidine as a chromogen substrate, Sigma). Tissue sections were counterstained with hematoxylin, dehydrated, cleared, and mounted with coverslips. The specificity of the antibody was examined using 1 % normal goat serum without the primary antibody. In regard to CASP3, the average number of positive cells was calculated in 30 fields/slide in five animals using magnification power ×200. Then, the data obtained were statistically analyzed.
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2

Cell Sample Preparation and Staining

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Following 120 h of treatment, cells were collected and resuspended in PBS containing 1% BSA. A total of 5.0×104 cells were concentrated onto glass slides using Cytospin 3 (Shandon, Runcorn, UK) at 650 rpm, for 5 minutes. The air dried slides were stained with May-Grünwald and Giemsa. For myeloperoxidase (mPOX) staining, cells were left in the dark for at least 24 h and stained using a DAB substrate kit (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer's protocol. Photomicrographs of the stained cells were acquired using a Nikon microscope (Eclipse E1000M) equipped with Nikon Digital Sight DS-Fi1 camera.
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3

Quantification of Thermogenic Adipocytes

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Fixed AT samples were dehydrated, cleared and paraffin embedded. TH immunoreactivity was determined by DAB immunohistochemistry using 3 μm sections from 3 different levels (100 μm apart) per sample. Briefly, sections were dewaxed and endogenous peroxidase blocked by incubating in 3% HO2 in methanol. Sections were then blocked in 3% rabbit serum and incubated overnight at 4 °C with anti-TH antibody (1/200) diluted in PBS. Bound primary antibody was detected using a biotinylated anti-sheep IgG secondary antibody, ABC reagent (Vector) and DAB Substrate kit (Sigma-Aldrich) according to the manufacturers’ instructions. Finally, sections were counterstained with hematoxylin. Parenchymal TH-positive fibers were analyzed by live count command in Lucia Imaging for image analysis (version 4.82, Nikon Instruments, Florence, Italy). The area of TH-positive nerve fibers was measured using images randomly captured with a Nikon E600 Eclipse microscope with camera. Ten areas from interscapular BAT were analyzed in each section. In inguinal ScW, 10 random areas were analyzed in each section. Areas of pure white adipocytes (larger, unilocular) and of pure beige adipocytes (smaller, multilocular) were analyzed separately.
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4

Epigenetic Regulation of MCM2 and NUP37

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Anti-MCM2 antibody (HPA031496), anti-NUP37 antibody (ab220675), anti-GAPDH antibody (ab181602), Goat Anti-Rabbit IgG H&L (ab205718) and DAB Substrate Kit (ab64238) were purchased from Sigma and Abcam, respectively. Human MCM2, NUP37 and β-actin primer sets were purchased from Gene Chem (Shanghai, CN). Decitabine (S1200) and CPI-455 (S8287) were purchased from Selleck (Shanghai, CN). Dimethyl sulfoxide (DMSO) was purchased from Sigma.
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5

Serum Immunoblotting for Cancer Biomarkers

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To obtain serum immunoblots of the cancer patients, the fractions of the lysates from the ion exchange chromatography were first separated by electrophoresis on 12% SDS–polyacrylamine gel (SDS–PAGE), and then electrctroblotted to polyvinylidene fluoride (PVDF) membranes (Invitrogen, Carlsbad, CA, USA) at 100 mA for 1 h at room temperature. The PVDF membranes were blocked with 5% milk in PBS, pH 7.4 and incubated with a 1 : 20 serum pool from the cancer patients overnight at 4 °C. Afterward, the PVDF membranes were washed and incubated with a 1 : 1000 dilution of HRP-conjugated rabbit anti-human IgG for 1 h at room temperature. After a further four times washing, binding of the primary antibody was revealed by using a 3.3′ diaminobenzidine (DAB) substrate kit (Thermo Labs Systems) in accordance with the manufacturer's instructions.
To obtain the immunoblot with the rabbit polyclonal antibody against the novel TAA or the anti-SCL-70 autoantibodies (Meridian Life Science), the recombinant human TOP1 fragments were separated on the SDS–PAGE and electroblotted to the PVDF membranes as described above. Western blot analyses were performed with 1 : 100 diluted anti-novel TAA or anti-SCL-70 autoantibodies and HRP conjugated goat anti-rabbit IgG (Sigma) or HRP-conjugated rabbit anti-human IgG. Antigen–antibody complexes were visualised using the DAB substrate kit as described above.
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6

TUNEL Assay for Apoptosis

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The paraffin-embedded left upper lung lobe sections were utilized for TUNEL assays in accordance with the manufacturer’s instructions (Roche, Mannheim, Germany). 3% H2O2 was used to inactivate endogenous peroxidases following deparaffinization and rehydration. Proteinase K was used to permeabilize the nuclei for 20 min at room temperature. Afterwards, endonucleotidyl transferase was added to the mixture and incubated at 37 °C for 1 h. Following the addition of peroxidase-conjugated antibody, color development was conducted using a DAB substrate kit (Sigma). Positive cells were counted using a microscope (Olympus, Tokyo, Japan). Cells that exhibit TUNEL positivity exhibit brown staining in the nucleus, and their results are expressed as a percentage of the total number of cells.
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7

Immunohistochemical detection of LPCAT3

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For immunohistochemistry, the antigen retrieval was done by boiling cartilage tissue sections for 15 min in sodium citrate buffer (10 mM, pH 6.0). The sections were incubated in 3% hydrogen peroxide for 20 min to quench endogenous peroxide activity. After blocking the tissue sections with an antibody diluent containing background reducing components (Thermofisher, MA, USA), they were incubated with control IgG, or primary antibody against LPCAT3 (5 µg/ml) overnight at 4°C. The sections were then incubated with biotin-labeled goat anti-rabbit IgG (1:500) and ultrasensitive streptavidin-HRP (1:500) (Sigma, Bangalore, India) and developed using DAB substrate kit (Sigma-Aldrich, Bangalore, India), mounted, and visualized with an Olympus BX41 microscope.
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8

Immunohistochemical Analysis of Vaccinia Virus

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Formalin-fixed tissues were sectioned and stained with routine hematoxylin and eosin (H&E) stains. Selected tissue sections were studied immunohistochemically by using an anti-vaccinia virus HRP rabbit polyclonal antibody (Thermo Fisher, Waltham, MA, USA) at a dilution of 1:200. The primary antibody was incubated with the section at 4°C overnight. A DAB substrate kit (Sigma Aldrich, St. Louis, MO) was used to detect the primary antibody, and Hematoxylin QS Vector (Vector Laboratories, Burlingame, CA) was used as a counterstain. Tissue sections from an uninfected rope squirrel were used as negative controls. H&E and IHC slides were reviewed by two pathologists (MR and AM).
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9

Histological and Immunohistochemical Analysis of Tumor Tissue

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Tumor tissues fixed with 4% paraformaldehyde were embedded in paraffin. The samples were sliced into 4-μm-thick sections. For histological examination, sections were deparaffinized and subjected to hematoxylin and eosin (H&E) staining. For immunohistochemical analysis, after deparaffinization the following primary antibodies were used for immunohistochemical staining: EGFR, Ki67, and p-STAT3 (Tyr705) (Cell Signaling Technology). The sections were then incubated with HRP-conjugated secondary antibody for 30 min and treated with a DAB Substrate Kit (Sigma-Aldrich).
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10

Immunohistochemistry of Senescence Markers

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For immunohistochemistry, fixed AT samples were embedded with paraffin. Paraffin sections, 4 μm thick, were reacted with 3% hydrogen peroxide in PBS for 10 min, and antigen-retrieved using citrate buffer (ph 6.0) in a steamer for 45 min. After blocking with 3% horse normal serum, sections were incubated overnight at 4°C with anti-CD68 (Dako, Glostrup, Denmark) primary antibody (1:200) and p16INK4a (ThermoFisher Scientific, Massachusetts, USA) primary antibody (1:800). Bound primary antibody was detected using a biotinylated anti-mouse IgG secondary antibody, ABC reagent (Vector Laboratories, Burlingame, USA), and DAB Substrate kit (Sigma-Aldrich) according to the manufacturer’s instructions. Finally, sections were counterstained with Fast Red and mounted. CD68 + cells were counted among SA-β-Gal + cells in the entire tissue section. The analysis excluded cells within and around blood vessels.
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