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20 protocols using filaggrin

1

Immunoblotting Analysis of Skin Proteins

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To harvest tissues for immonoblotting, tissues were lysed in Pro-Prep solution (Intron, Daejeon, Korea) and homogenized with the TissueLyser (Qiagen, Hilden, Germany). To harvest cell lysates for immunoblotting, cells were lysed in Pro-Prep solution. Total protein was measured using a BCA protein assay kit (Thermo Scientific, Rockford, IL, USA). Samples (20~30 µg protein per lane) were run on sodium dodecyl sulfate-polyacrylamide gels, transferred onto nitrocellulose membranes, and incubated with the appropriate antibodies. Blots were then incubated with peroxidase-conjugated secondary antibodies and visualized by enhanced chemiluminescence (Intron). The following primary antibodies were used for western blots: S100A8, involucrin, and actin (Santa Cruz Biotechnologies), loricrin (Covance, Princeton, NJ, USA), and filaggrin (Abcam, Cambridge, UK).
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2

Immunohistochemical Analysis of Skin Markers

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Paraffin-embedded TMA sections were used for immunohistochemistry. Immunohistochemical stains were prepared as described in previous reports [20 (link),21 (link)]. After deparaffinization, the sections were rehydrated with a sequential treatment of 100%, 90%, and 70% ethanol solutions. Then, they were incubated with a peroxidase-blocking reagent for 30 min to avoid endogenous peroxidase activity, and with a serum-free protein block for 15 min at room temperature (RT) to block nonspecific antibody binding. They were applied with primary antibodies of loricrin (Abcam, Boston, MA, USA) and filaggrin (Abcam) for 30 min at 37 °C. loricrin and filaggrin were detected using diaminobenzidine (DAB) as a substrate. The degree of staining was measured by scoring system from 0 to 3 (0: no staining; 1: mild; 2: moderate; 3: strong) and reported as the mean ± SEM. Keratinocyte proliferation was stained as PCNA-positive cells with anti-PCNA antibody (Abcam) and counted in the basal and supra-basal cell layers from each section.
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3

Immunohistochemical Analysis of KLK5 and Filaggrin

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Paraffin tissue sections (4 μm) were deparaffinized and immunostained for kallikrein related peptidase 5 (KLK5) and filaggrin (Abcam, Cambridge, MA, USA) using Goat Anti-Rabbit IgG H&L (Alexa Fluor® 488, Abcam) secondary antibodies, according to the manufacturer’s instructions. Images were acquired using a fluorescence microscope (Eclipse TE2000-U; Nikon, Tokyo, Japan).
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4

Adiponectin Regulation of Lipid Metabolism

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Recombinant human full-length adiponectin was obtained from Biobud (Seongnam, Korea). We obtained antibodies against LXRα, PPARα, PPARβ, PPARγ, sterol regulatory element-binding proteins (SREBPs), and b-actin from Santa Cruz Biotechnology (Santa Cruz, CA, USA); filaggrin, involucrin, cytokeratin 14, PPARβ, and SIRT1 from Abcam (Cambridge, UK). sphingosine-1-phosphate (S1P), sphingosine, sphinganine, and ceramide were obtained from Avanti Polar Lipid (Alabaster, AL, USA). Organic solvents for sphingolipid extraction and liquid chromatography tandem-mass spectrometry analysis were purchased from Merck (Darmstadt, Germany).
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5

Protein Expression Analysis in Keratinocytes

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Total protein was extracted from HaCaT cells and protein concentration was determined using Bradford protein assay kit (Bio-Rad Laboratories). 20 μg of protein extracts were separated by 10% SDS-PAGE and electrotransferred onto a polyvinyllidenedifluoride membrane. The membranes were incubated overnight at 4 °C with primary antibodies against IL-13Rα1 (1:1000; Abcam, Cambridge, UK), p-S6K1 (Thr389, 1:1000, Cell Signaling Technology, USA), S6K1 (1:1000, Cell Signaling Technology, USA), p-Akt (Ser473, 1:2000, Cell Signaling Technology, USA), Akt (1:1000; Abcam, Cambridge, UK), p-mTOR (Ser2448, 1:1000, Cell Signaling Technology, USA), mTOR (1:1000, Cell Signaling Technology, USA), filaggrin (1:1000; Abcam, Cambridge, UK), loricrin (1:200; Santa Cruz Biotechnologies, CA, USA), involucrin (1:1000; Abcam, Cambridge, MA, USA), and β-actin (1:1000; Abcam, Cambridge, UK). The secondary antibodies (Sigma-Aldrich, St. Louis, MO) were incubated in 5% skimmed milk powder. The SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific Inc) was used to visualize the signals.
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6

Protein Expression Analysis in Skin Tissue

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Primary antibodies reactive with mouse Sca-1, STAT3, TAK1, phospho-TAK1 (Thr184/187), phospho-STAT3 (Tyr705), and β-actin (Cell Signaling Technology, Danvers, MA), murine mast cell protease-1 (mMCPT1; BioLegend, San Diego, CA), filaggrin (Abcam, Cambridge, MA) and vaccinia antigens (Santa Cruz Biotech, Dallas, TX) were used according to manufacturer recommendations. Formalin-fixed, paraffin-embedded skin tissues were sectioned and processed as previously described [4 (link)]. Cell cytosolic fractionation and immunoblot of HEK-001 cell lysates were analyzed as previously described [4 (link)].
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7

Western Blot Analysis of Epidermal Proteins

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Cells were lysed in RIPA buffer at 4°C for 15 min. Total proteins were quantified using BCA method (Thermo Fisher Scientific). Then, equal amounts of proteins (30 μg) in the lysate were separated by 10% SDS-PAGE. Later on, the proteins were transferred onto polyvinylidene difluoride membrane (Thermo Fisher Scientific). After that, the membrane was blocked in 5% skimmed milk at room temperature for 1 h, and then probed with the primary antibodies against Filaggrin (1:1000, Abcam Cambridge, MA, USA), KERATIN 1 (1:1000, Abcam), P21 (1:1000, Abcam), CYCLIN E1 (1:1000, Abcam), cyclin-dependent kinase 2 (CDK2, 1:1000, Abcam), INVOLUCRIN (1:1000, Abcam), KERATIN 10 (1:1000, Abcam), E2F5 (1:1000, Abcam) and BETAACTIN (1:1000, Abcam) at 4°C overnight. Subsequently, goat anti-Rabbit IgG secondary antibodies (1:3000, Abcam Cambridge, MA, USA) were incubated with the membranes at room temperature for 1 h. Finally, the membrane was scanned using an electrochemiluminescence (Thermo Fisher Scientific). β-actin was acted as the internal control.
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8

Western Blot Analysis of Skin Barrier Proteins

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Collected cells were homogenized in RIPA lysis buffer (Atto, Tokyo, Japan) and then prepared by centrifuging at 10,000 g for 10 min. For nuclear and cytosolic fractions, cells were lysed with nuclear or cytoplasmic extraction reagents (Pierce/Thermo Scientific, Rockford, IL, USA) according to the manufacturer's protocol. Next, 30 μg of proteins was separated by 10–12% SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking for 1 h at 37°C in 5% skim milk (in 1x TBS), the membranes were incubated with primary antibodies and then incubated with horseradish peroxidase-conjugated anti-IgG secondary antibody. Anti-IκB-α, P-IκB-α, NF-κB p65, STAT1, and P-STAT1 were purchased from Cell Signaling Technology Inc. (Danvers, MA, USA). Antiinvolucrin, loricrin, and filaggrin were purchased from Abcam Inc. (Cambridge, MA, USA). An anti-β-actin antibody was purchased from Sigma-Aldrich Inc. (St. Louis, MO, USA). All bands were detected by enhanced chemiluminescence (Bio-Rad, Hercules, CA, USA). The band intensities of specific proteins were quantified using Gelquant 2.7 (DNR Bio-Imaging Systems, Jerusalem, Israel).
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9

Comprehensive Skin Tissue Analysis

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Mice skin tissue (dorsal and tail skin) at various postnatal day ages were collected and fixed by neutral buffered formalin (NBF) or directly embedded in OCT compound (Tissue-Tek) and frozen. Immunofluorescence assays (IF) and Immunohistochemical analysis (IHC-P) was performed as previously described7 (link). Paraffin embedded tissue blocks were sectioned and Haematoxylin and Eosin staining (H&E) was performed to analyze the phase of the hair follicle cycle. Immunofluorescence assays (IF) and Immunohistochemical analysis (IHC-P) was performed on OCT frozen tissue and Paraffin embedded block respectively23 . Tail whole mount was performed as described previously48 (link). Briefly, tail skin was incubated in 5 mM EDTA followed by separation of epidermal sheet from dermis followed by fixing with 2% formaldehyde for 10 minutes. Nile red was used to stain the sebocytes of sebaceous gland and confocal microscopy was used for image acquisition. Primary antibodies used such as: CD34 (1:100, BD Pharmingen); α-6 integrin (1:100, BD Pharmingen); BrdU (1:250, Abcam); Ki67 (1:100; Novocastra); Filaggrin (1:1000, Abcam); Loricrin (1:1000, Abcam); K10 (1:1000, Abcam); Lrig1 (1:500, R&D systems) and Sox9 (1:500, Merck Millipore).
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10

Adiponectin Signaling in Skin Inflammation

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Recombinant human full-length adiponectin protein was obtained from Biobud (Seongnam, Korea). We obtained antibodies against AdipoR1 and AdipoR2 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); filaggrin from Abcam (Cambridge, UK). Polyinosinic-polycytidylic acid [Poly(I:C)] was purchased from Sigma-Aldrich (St. Louis, MO, USA), and TNF-α, IL-4, and IL-13 were from R&D Systems (Minneapolis, MN, USA).
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