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4 protocols using cd64 percpcy5

1

Flow Cytometry Analysis of Immune Cells

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Single cell suspensions of blood (by cardiac puncture) were collected from NRL-CV, NRL and wild-type adult male and female mice and stained for flow cytometry. Antibodies used: CD3-BV785 (17A2, BD Biosciences, cat 564010), CD45-BV711 (30-F11, Biolegend, cat 103147), CD4-PE-Cy7 (RM4–4, Biolegend, cat 116016), CD8-BUV395 (53–6.7, BD Bioscience, cat 563786), CD19-BV605 (6D5, Biolegend, cat 115540), NKp46-BUV737 (29A1.4, BD Bioscience, cat 612805), LY6G-APC-Cy7 (1A8, Biolegend, cat 127623), CD11b-BV650 (M1/70, Biolegend, cat 101259), SiglecF-AF647 (E50–2440, BD Bioscience, cat 562680), CD64-PerCPCy5.5 (X54–5/7.1, Biolegend, cat 139308), TCRγδ-FITC (GL3, Biolegend, cat 118105), CD11c-BV510 (N418, Biolegend, cat 117353) and counterstained with DAPI (ThermoFisher, cat D1306). Samples were acquired on a BD Fortessa instrument. Data were analysed using FlowJo v10.8.1. For cell gating, RFP+ cells were subgated out of CD45+DAPI− single and the immune subsets were subgated out of the RFP+ gate (see Table 1 and Supplementary Figure 4a).
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2

Isolation and Analysis of Adipose Tissue Macrophages

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17 week-old mice (n = 7–8 per group from ≥ 4 litters) were perfused with 15 ml of PBS, and one epididymal fat pad was placed in Hank’s Balanced Salt Solution (HBSS; Invitrogen) supplemented with 1% BSA. Adipose tissue was minced and incubated at 37°C in 1mg/ml collagenase (type IV; Worthington Biochemical, Lakewood, NJ). The cell suspension was filtered through a 100 μm filter and centrifuged. The pellet of stromal vascular cells (SVC) was re-suspended in 500 μl of RBC lysis buffer (BioLegend), followed by dilution with PBS containing 1 mM EDTA, 25 mM HEPES and 1% heat-inactivated fetal bovine serum. A minimum of 1x105 cells were aliquoted into single-stain controls, fluorescence minus one controls, and sample tubes, then incubated in Fc Block (rat anti-mouse CD16/CD32) followed by conjugated antibodies. DAPI was used to discriminate live/dead cells. Flow data were acquired on a FACSAria-I (BD Bioscience) and analyzed using Cytobank [32 ]. FMO controls were used to establish polygonal gates. The following commercially available fluorochrome conjugated antibodies were used: CD45 Apc-Cy7 for leukocytes, CD64 PerCp-Cy5.5 for macrophages, CD11c PE-Cy7 for M1 macrophages (BioLegend, San Diego, CA), and CD301 Alexa 647 for M2 macrophages (AbD Serotec, Raleigh, NC).
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Comprehensive Immune Cell Profiling in Mouse Lungs

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BMDCs and/or whole lung lysates were incubated with Zombie UV Fixable Viability Kit (BioLegend, San Diego, CA) at room temperature for 15 minutes. Cells were washed with FACS rinsing buffer, pelleted, and incubated with anti-mouse CD16/32 (BioLegend) for 15 minutes at 4 °C to block non-specific Ig binding. Following subsequent washing and centrifugation, cells were incubated with antibody cocktails containing some or all of the following markers: CD11c BV711, CD80 BV650, CD64 PerCP/Cy5.5, Ly6C BV605, CCR-7 APC, MHC-II (I-A/I-E) BV 421, Ly6G BV650, CD40 PE/Cy7,CD4 APC/Cy7, CD3 APC, and CD8α PerCP/Cy5.5 (BioLegend); CD86 BUV395, CD11b BV480, Siglec-F APC-R700, CD45 BV805, CD103 PE-CF594, and CD24 BUV 737 (BD Biosciences, San Jose, CA). Cells were analyzed using the BD LSRFortessa™ (BD Biosciences). Cell aggregates were removed by gating single cells on the forward light scatter (FSC-H vs FSC-A). Dead cell and debris were excluded before gating for myeloid innate immune cells and/or T-cell markers. Fluorescence minus one (FMO) controls were used to set up gating strategies used in these experiments. Data was analyzed using FlowJo software v10.7.1 (Tree Star Inc.).
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4

Isolation and Identification of Lung and MLN Cells

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Lung and MLN cells were isolated from saline- and HDM-challenged WT mice by enzymatic digestion with liberase (100 ug/ml) (Roche, Indianapolis, IN) and DNase I (0.2 mg/ml)(Sigma-Aldrich, St. Louis, MO) while agitated at 37° C for 25 min. Single cell suspensions were reacted with the following anti-mouse antibodies in the presence of 1% mouse serum for 30 min at RT in the dark; CD11c-APC-780, MHC-II-PE-CY7, Mar-1-eFluor® 450, CD103-APC, and PDCA-1-Alexa Fluor® 488, all from eBiosciences (San Diego, CA), as well as CD11b-Brilliant Violet 605 and CD64-PerCP-Cy5.5, both from Biolegend (San Diego, CA). The anti-rat VLDLR antibody (6A6, Santa Cruz Biotechnology, Santa Cruz, CA) that recognizes mouse VLDLR was conjugated with PE using a Zenon® labeling kit (Invitrogen, Carlsbad, CA). Following two washes, data was acquired on a LSRII (BD Biosciences, USA) flow cytometer equipped with 407, 488, 532, and 633 LASER lines using DIVA 6.1.2 software and analyzed with Flow Jo software version 9.6.4 (Treestar, San Carlos, CA). Positive staining for VLDLR was again determined using florescence minus one (FMO) for the VLDLR antibody as the control.
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