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3 protocols using ab150353

1

Immunostaining of Primary Neurons

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Coverslips with fixed primary neurons were transferred to 4-well slides and recovered in PBS for 10 min. Cells were permeabilized with 0.2% Triton-X100 in PBS for 5 minutes and washed 3 times over 6 minutes with PBS-T (PBS + 0.02% Tween-20; one quick wash followed by 2×3 min). Samples were blocked in PBS-T supplemented with 3% BSA and 2% donkey serum (blocking buffer) for 30 min before incubation with primary antibodies (GFP #A-11122 Invitrogen; RFP #600–401-379 Rockland; Actin #A5441 Sigma; WAVE1 #ab272916 abcam; Cpeb4 #ab224162 abcam; Rbms1 #ab150353 abcam) in PBS-T+3% BSA overnight at 4°C. The next day, coverslips were washed three times in PBS-T (1x fast wash, 2× 5min), incubated with isotype-specific secondary antibodies (Life Technologies) and DAPI (1:10,000, #D1306 ThermoFisher) for 2–3 hours at room temperature in PBS-T+3% BSA on an orbital shaker, followed by three final washes in PBS-T as described above, mounting on a glass slide using fluoromount (#0100–01, VWR/Southern Biotech), and sealing with nail polish. Fluorescence images were acquired using an epifluorescence microscope equipped with a motorized stage and a 40x oil objective (Nikon NiE, EDF z-stack projections through NIS Elements software (Nikon)), as well as a confocal microscope equipped with a 40x oil objective (LSM880, Zeiss, maximum intensity projections of 10 μm z stack).
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2

Protein Visualization and Antibody Western Blot Protocols

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All protein visualization procedures were performed according to standard protocols. For silver staining we used the SilverQuest kit (LC6070, Invitrogen). The following in-house generated monoclonal antibody supernatants were used in Western blots at a 1:10 dilution: anti-Roquin-1/2, cl. 3F12; anti-Regnase-1, cl. 15D11; anti-pan-Ago, cl. MAGO3-5, anti-Nufip2, cl. 23G8, anti-pan-YTHDF, cl. 17F2; anti-GFP, cl. 3E5-111. Commercial antibodies used for Western blots were: anti-Fxr1, polyclonal, 4173, 1:1000, (Cell Signaling); anti-Fxr2, cl. D85D6, 7098, 1:1000 (Cell Signaling); anti-TTP, cl. TP6, 1:1000 (Sigma); anti-Gapdh, cl. 6C5, CB1001, 1:10,000 (Calbiochem), anti-Celf1, cl. 850717, MAB9388, 0.5 µg/ml (R&D SYSTEMS); anti-RBMS1, cl. EPR9825(B), ab150353, 1:5000 (abcam); anti-CPEB4, polyclonal, 25342-1-AP, 1:750 (Proteintech); anti-Ptbp1, 1:1000, 8776 (Cell Signaling); anti-tubulin, 1:1000, 86298 (Cell Signaling); goat anti-rat antibody, cl. Poly4054, 1:200 (Biolegend); goat anti-mouse antibody, polyclonal, 554001, 1:400 (BD Bioscience) and anti-Ptbp1, (1:1000, 8776, Cell Signaling). Proteins were visualized by staining with anti-rat (1:3000, 7077, Cell Signaling) or anti-mouse (1:3000, 7076, Cell Signaling) secondary antibodies conjugated to HRP.
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3

Standardized Western Blot Technique

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Western blots were performed using standard tris-glycine SDS-PAGE protocols. Samples had normalized protein concentration assessed using a Bradford assay (#23246, Thermo). Resolved proteins were electroblotted onto PVDF membranes using semi-dry transfer, blocked for 30 min in TBS supplemented with 0.1% Tween-20 and 5% skim milk, and incubated with primary antibodies (GAP43 #MAB347 Millipore; Actb #A5441 Sigma; Gm130 #610823 BD Biosciences; MAP2 #M1406 Sigma; WAVE1 #ab272916 abcam; WAVE2 #3659T Cell Signaling Technologies; WAVE3 #2806S Cell Signaling Technologies; Cpeb4 #ab224162 abcam; Rbms1 #ab150353 abcam; Tau #AF3494 RR&D) in TBS supplemented with 0.1% Tween-20 and 3% BSA over night at 4°C. The next day, the membrane was washed three times in TBS supplemented with 0.1% Tween-20, incubated for 2 hours at room temperature with secondary antibodies that were isotype-specific, HRP-conjugated, and cross-absorbed (Life Technologies), then washed again three times with TBS supplemented with 0.1% Tween-20. Immunoreactive bands were visualized through detection of chemiluminescence using a CCD camera imager (FluoroChemM, Protein Simple). Quantification of signal intensity in the various bands was performed using the standard Fiji software package.
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