The largest database of trusted experimental protocols

20 protocols using usb2000 spectrophotometer

1

UV-vis Spectroscopy Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
UV–vis absorption spectra were recorded using an Ocean Optics QE65 Pro or an Ocean Optics USB 2000 spectrophotometer.
+ Open protocol
+ Expand
2

Characterizing Light Stimulus Intensity

Check if the same lab product or an alternative is used in the 5 most similar protocols
We measured the spectral intensity profile (in μW·cm−2·nm−1) of our light stimuli with a calibrated USB2000+ spectrophotometer (Ocean Optics). We transformed the stimulus intensity into equivalents of photoisomerizations per rod and second, assuming dark-adapted rods42 (link). Briefly, the spectrum was converted to photons·cm−2·s−1·nm−1, convolved with the normalized spectrum of rod sensitivity5 (link), and multiplied with the effective collection area of rods (0.5 μm2)55 (link). The results for a stimulus intensity of ‘30’ range from 1 R*·s−1 per rod (ND8) to 104 R*·s−1 per rod (ND4), see Fig. 1b. These calculations, and recordings from mice lacking functional rods and functional cones (not shown), suggest that ND8 and ND7 correspond to scotopic conditions, ND6 weakly activates cones, ND5 is fully mesopic, and ND4 is photopic. Note that our characterization of ND7 as scotopic may partly be owed to our use of rather low-contrast stimuli. We cannot exclude that stimuli with stronger contrast might activate cones already at ND7 (see e.g. refs. 5 (link),56 ).
+ Open protocol
+ Expand
3

Characterizing Light Stimulus Intensity

Check if the same lab product or an alternative is used in the 5 most similar protocols
We measured the spectral intensity profile (in μW·cm−2·nm−1) of our light stimuli with a calibrated USB2000+ spectrophotometer (Ocean Optics). We transformed the stimulus intensity into equivalents of photoisomerizations per rod and second, assuming dark-adapted rods42 (link). Briefly, the spectrum was converted to photons·cm−2·s−1·nm−1, convolved with the normalized spectrum of rod sensitivity5 (link), and multiplied with the effective collection area of rods (0.5 μm2)55 (link). The results for a stimulus intensity of ‘30’ range from 1 R*·s−1 per rod (ND8) to 104 R*·s−1 per rod (ND4), see Fig. 1b. These calculations, and recordings from mice lacking functional rods and functional cones (not shown), suggest that ND8 and ND7 correspond to scotopic conditions, ND6 weakly activates cones, ND5 is fully mesopic, and ND4 is photopic. Note that our characterization of ND7 as scotopic may partly be owed to our use of rather low-contrast stimuli. We cannot exclude that stimuli with stronger contrast might activate cones already at ND7 (see e.g. refs. 5 (link),56 ).
+ Open protocol
+ Expand
4

Reflectance Spectroscopy of Materials

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reflectance measurements were completed in a home-made sample holder using a USB2000 + spectrophotometer, a HL-2000-FHSA tungsten light source, and a R400-7-VISNIR optical fiber reflectance probe, all from Ocean Optics (Dunedin, FL). The spectra were recorded using Ocean Optics Spectra Suite Spectroscopy Software over a wavelength range of 350–1025 nm. Measurements were performed in the sample holder that leads to careful sample positioning, test stability, and precise temperature control.
+ Open protocol
+ Expand
5

Characterization of AgNP-Embedded Microgels

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Hitachi H-7650 transmission electron microscope (TEM, Japan) with an accelerating voltage of 200 kV was utilized to obtain TEM images. X-Ray Photoelectron Spectroscopy (XPS) was performed on a Kratos AXIS Ultra spectrometer equipped with a monochromated Al Kα ( = 1486.6 eV) X-ray source (Kratos Analytical, Manchester, UK). Nicolet Magna 750 FTIR Spectrometer and Nic-Plan FTIR Microscope (Nicolet, USA) with pure KBr as the background was applied to record Fourier transform infrared (FTIR) spectra (400–4000 cm−1). The microgel samples for TEM, XPS and FTIR characterization were prepared using the procedure described below for generating AgNPs in the etalons with two modifications. First, to obtain sufficient sample for analysis we didn't wash the slide after microgel painting, which yielded a thick microgel layer for AgNP generation. Second, the etalon's top Au layer was not deposited on the microgels, which allowed for their easy removal from the surface while avoiding potential contamination. Reflectance measurements were conducted using a USB2000+ spectrophotometer, an HL-2000-FHSA tungsten light source, and an R400-7-VISNIR optical fiber reflectance probe, all from Ocean Optics (Dunedin, FL). The spectra were recorded using Ocean Optics Spectra Suite spectroscopy software over a wavelength range of 400–1000 nm.
+ Open protocol
+ Expand
6

Portable 365 nm LED Light Source

Check if the same lab product or an alternative is used in the 5 most similar protocols
The
light source was constructed from
a Nichia NCSU033B LED, with a 365 nm peak irradiation. This was driven
by a 6.5 V power source using a current limiting power resistor. The
light source holds the LED ∼0.32 cm from the skin surface,
and the measured absolute irradiance at the skin was 0.71 W/cm2. The absolute irradiance of the light source was determined
using a calibrated USB2000 spectrophotometer (Ocean Optics) and a
CC-3–UV-S cosine corrector via an optic fiber. The Spectrasuite
software was used to analyze absolute irradiance in the range of 350–400
nm that brackets the LED output.
+ Open protocol
+ Expand
7

Petal Reflectance Spectrophotometry Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The spectral reflectance of petals was measured with a USB2000 spectrophotometer (Ocean Optics, Inc., Ostfildern, Germany) and illumination was provided by a DH-2000-BAL light-source (Ocean Optics, Inc., Ostfildern, Germany), both connected via coaxial fiber cable (QR400–7-UV-VIS, Ocean Optics, Inc., Dunedin, FL, USA). Reflectance was measured relative to a standard white reference tile (Diffuse Reflectance Standard, Spectralon®, labsphere). All reflectance measurements were taken in a constant angle of 90° towards the upper surface of each petal, and the distance between the probe tip and the sample surface was kept constant (5 mm) (cf. Fig. 4a).
+ Open protocol
+ Expand
8

Photocycling Kinetics of His6-Tagged Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Absorbance scans were measured on an Ocean optics USB2000+ spectrophotometer. Photocycle kinetics was measured by monitoring the absorbance at 450 nm (A450); after 15 s of baseline measurements, samples were stimulated with a collimated LED (Mightex; 10 s, λ = 455 nm, 15 mW/cm2), and recovery was monitored in the dark. For solid-phase photocycling measurements, 40 ng of His6-tagged protein was nutated with 0.5 mg of magnetic Ni-NTA beads (resin 88221; Thermo Fisher) in 400 μL of PBS for 1 h, washed, and resuspended in 200 μL of PBS; flavin fluorescence scans were then made on a Tecan Infinite M200 plate reader (λex = 450; λem = 505), similar to absorbance scans.
+ Open protocol
+ Expand
9

Optical and Magnetic Characterization of Irradiated Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Annealing at temperatures over the range of 77–270 K was performed by placing the irradiated sample in the appropriate bath (e.g., n-pentane or methanol cooled with liquid nitrogen) followed by re-freezing in liquid nitrogen. The trapped electrons formed during γ-irradiation, giving strong absorbance in the visible range, were photo bleached prior to spectroscopic measurements by illuminating the sample with the white light of a 100 W halogen lamp.
Optical spectra at 77 K were recorded in a cold finger quartz Dewar, filled with liquid nitrogen, using an Ocean Optics USB 2000 spectrophotometer. The X-band CW electron spin resonance spectra were recorded on Bruker ESR-300 spectrometer equipped with an Oxford Instruments ESR 910 continuous He flow cryostat.
+ Open protocol
+ Expand
10

Measuring Photoreceptor Effective Stimuli

Check if the same lab product or an alternative is used in the 5 most similar protocols
We measured the spectral intensity profile (in µW cm–2 nm–1) of our light stimuli with a calibrated USB2000+ spectrophotometer (Ocean Optics). We then transformed the stimulus intensity into rod-effective photons cm–2 s–1 by converting the spectrum to photons cm–2 s–1 nm–1, and integrating it with the normalized spectrum of rod sensitivity53 (link). In addition, for comparison we report stimulus intensity in equivalents of photoisomerizations per rod and second (R* rod–1 s–1), assuming dark-adapted rods, by multiplying the photon flux with the effective collection area of rods (0.5 µm2)54 (link). The results for a stimulus intensity of “30” range from 2 × 108 rod-effective photons cm–2 s–1 (1 R* rod–1 s–1, ND8) to 2 × 1015 photons cm–2 s–1 (107 R* rod–1 s–1, ND1), see Fig. 2b, c. Note that the intensity values given as R* rod–1 s–1 (isomerizations events s–1 rod–1) serves for only comparison. It truly reflects photoisomerizations only at low intensities; at high backgrounds, bleaching adaptation leads to a much lower effective rate of isomerizations.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!