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10 protocols using as1008

1

Western Blot Analysis of Osteogenic Markers

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Lysis buffer (#AS1004, Aspen, South Africa) containing 1% protease inhibitor (#AS1008, Aspen) was used to lyse cells and tissue samples. Proteins were separated via SDS-PAGE, transferred to NC membranes (#IPVH00010, Millipore, USA), blocked with 5% nonfat milk, and stained overnight at 4°C with antibodies specific for ALP (1:1000, Sigma, USA,#ab95462), Osteocalcin (1:500, Sigma, USA, #ab93876), RunX2 (1:500, Sigma, USA, #ab23981), p53 (1:1,000, Sigma, USA, #SAB1302059), and GAPDH (1:10,000, Sigma, USA, #ab37168). Blots were then stained with appropriate horseradish peroxidase (HRP)-conjugated secondary antibodies (#AS1058, Aspen) and proteins were detected with a chemiluminescence detection system. Each experiment was independently repeated three times.
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2

Protein Extraction and Western Blotting

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Total protein was extracted using RIPA kit (AS1004, ASPEN), and protease inhibitors (AS1008, ASPEN) were added during protein extraction to prevent protein degradation. After electrophoresis, coating and sealing, the indexes to be detected were incubated with primary antibody and secondary antibody, and finally immunolabeled with enhanced chemiluminescence reagent (AS1059, ASPEN). Antibodies against caspase-3 (#9662), caspase-12 (#9671), phosphorylated PERK (p-PERK, Thr980, #3179), PERK (#3192), phosphorylated eIF2α (p-eIF2α, Ser51, #3597), eIF2α (#2103), GRP78 (#3183), CHOP (#2895), and HO-1 (#43966) were obtained from cell signing technology corporation (Massachusetts, USA). Anti-β-tubulin (#ab6046), anti-β-actin (#ab8226), and anti-Nrf-2 (#ab137550) were purchased from Abcam (Cambridge, USA). Antihistone H3 (EM1108) was purchased from ELK Biotechnology (Wuhan, China).
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3

Apoptosis and Cell Cycle Regulation

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Tissues or cells were lysed via a lysis buffer (#AS1004, Aspen, South Africa) with 1% protease inhibitor (#AS1008, Aspen, South Africa) on ice. First, the protein fractions were collected, after which SDS-PAGE separation was carried out, followed by transfer onto a NC membrane (#IPVH00010, Millipore, USA). And then membranes were blocked by using 5% skim milk and probed at 4°C overnight, followed by HRP-conjugated secondary antibodies (#AS1058, Aspen, South Africa). Protein was visualized using a chemiluminescence detection system (#LiDE110, Canon, Japan). Antibodies were as follows: anti-Bcl-2 (#MAB-8272, 1: 500, R&D System, USA), anti-Bax (#AF820, 1: 1000, R&D System, USA), anti-cyclin D1 (#AF4196, 1: 500, R&D System, USA), and anti-cyclin D3 (#MAB6570, 1: 500, R&D System, USA). All experiments were conducted in triplicate.
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4

Western Blot Analysis of Cellular Proteins

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The cells were lysed on ice in buffer containing protease inhibitors (AS1008, Aspen). The protein fractions were collected and separated by sodium dodecyl sulfate‒polyacrylamide gel electrophoresis (SDS‒PAGE). Then, the proteins were electrophoretically transferred onto polyvinylidene fluoride (PVDF) membranes (IPVH00010, Millipore). The membranes were blocked with 5% skim milk. Then, primary antibodies were added and incubated overnight at 4 °C. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies. The antibodies used in this study included anti-Nrf2 (1:1000, PA5-27882, Thermo Fisher Scientific), anti-β-Actin (1:10,000, TDY051, TDY Biotech), anti-Histone H3 (1:10,000, #4499, Cell Signaling Technology), anti-Drp1 (1:1000, #8570, Cell Signaling Technology), anti-p-Drp1 (Ser616) (1:500, PA5-106169, Thermo Fisher Scientific), anti-VDAC1 (1:3000, ab15895, Abcam), anti-NOQ1 (1:3000, ab80588, Abcam), anti-HO-1 (1:5000, 10701-1-AP, Proteintech Group), anti-SOD2 (1:3000, ab68155, Abcam), anti-cleaved Caspase-3 (1:1000, AF7022, Affinity Biosciences), anti-Bax (1:2000, #2772, Cell Signaling Technology) and anti-Bcl-2 (1:1000, ab19649, Abcam).
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5

Proteomic Analysis of Ferroptosis Regulators

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In a solution containing a protease inhibitor (AS1008; Aspen), PC12 cells were dissolved on ice for 30 min. BCA protein assay kit was used to measure the protein concentration (PC0020; Solarbio). The protein samples were heated at 100°C for 10 min to completely denature the proteins. The protein samples were then separated by SDS‐PAGE electrophoresis and transferred to PVDF membranes (IPVH00010; Millipore). After being blocked for an hour with 5 percent skim milk, the membrane was incubated with the primary antibody at 4°C overnight. The antibodies used in this study consisted of anti‐DHODH (1:1000, 14877‐1‐AP; Proteintech), anti‐ACSL4 (1:1000, 22401‐1‐AP; Proteintech), anti‐COX2 (1:1000, 66351‐1‐Ig; Proteintech), anti‐GPX4 (1:1000, 67763‐1‐Ig; Proteintech), anti‐ALOX15 (1:1000, ab244205; Abcam), anti‐P53 (1:1000, AB_297667; Abcam). After being washed three times with TBST, the membrane was incubated for 10 min at room temperature with a secondary antibody that had been enzyme‐labeled. Imaging was carried out using an ECL chemiluminescence substrate (BL520B; Biosharp). Band intensities were quantified using Image J software.
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6

Protein Expression Analysis Protocol

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Calluses or cells were lysed with lysis buffer (AS1004; Aspen, South Africa) with 1% protease inhibitor (AS1008; Aspen, South Africa) on ice. The protein fractions were collected and underwent SDS-PAGE separation, followed by transfer onto a nitrocellulose membrane (IPVH00010; Millipore, USA). Membranes were blocked using 5% skim milk and then probed at 4°C overnight with primary antibodies, followed by horseradish-peroxidase (HRP)-conjugated secondary antibodies (AS1058; Aspen, South Africa). A chemiluminescence detection system (LiDE110; Canon, Japan ) was used to visualize protein based on provided directions. Antibodies were as follows: anti-collagen I (1:500, ab34710; Abcam, USA, ), anti-ALP (1:1,000, ab95462; Abcam, USA), anti-osteocalcin (1:500, ab93876; Abcam, USA), anti-RunX2 (1:500, ab23981; Abcam, USA), anti-PTEN (1:2,000, 9188; CST, USA, ), anti-p-AKT (1:1,000, 4060; CST, USA), anti-AKT (1:2,000, 9272; CST, USA), anti-p-PI3K (1:500, ab182651; Abcam, USA), anti-PI3K (1:2,000, 4292; Abcam, USA), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:10,000, ab37168; Abcam, USA). All experiments were conducted in triplicate.
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7

Western Blot Analysis of Signaling Pathways

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After the same treatment as described in 2.10, HSFs were harvested and lyzed in RIPA buffer (AS1004, ASPEN) containing inhibitors of protease and phosphatase (AS1008, ASPEN), followed by centrifugation (12000 rpm × 5min). The BCA protein kit (AS1086, ASPEN) was used to assess the protein contents in the lysate. The cell lysate samples (50μg/lane) were separated by SDS-PAGE gels (AS1012, ASPEN) and transferred to PVDF membranes (IPVH00010, Millipore). After being blocked with 5 % bovine serum, the membranes were incubated with primary antibodies at 4 °C overnight. The membrane was then incubated with the secondary antibody at room temperature for 1 h after being washed with TBST. The proteins were detected using an ECL chemiluminescence kit (AS1059, ASPEN). The primary antibodies included p-p38 (28796-1-AP, Proteintech), p38 (14064-1-AP, Proteintech), p-JNK(#4668, CST), JNK(#9252, CST), p-ERK (28733-1-AP, Proteintech), ERK (11257-1-AP, Proteintech), Bax (#2772, CST), Cleaved caspase3 (19677-1-AP, Proteintech), HIF-1α (20960-1-AP, Proteintech), p53 (10442-1-AP, Proteintech), Beclin-1 (AF5128, affinity), LC3-II (ab48394, abcam), β-Actin (TDY051, 1:10000).
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8

Quantitative Protein Analysis of Osteogenic Markers

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Lysis buffer (#AS1004, Aspen, South Africa) containing 1% protease inhibitor (#AS1008, Aspen) was used to lyse cells or callus samples, after which protein was separated via SDS-PAGE and transferred to NC membranes (#IPVH00010, Millipore, USA) that were blocked with 5% nonfat milk and stained overnight at 4 °C overnight with antibodies specific for collagen I (1:500, Sigma, USA,#ab34710), ALP (1:1000, Sigma, USA,#ab95462), Osteocalcin (1:500, Sigma, USA, #ab93876), RunX2 (1:500, Sigma, USA, #ab23981), SIK2 (1:1000, Sigma, USA, #SAB1302059), SIK3 (1:1000, Sigma, USA, #SAB3500695), and GAPDH (1:10,000, Sigma, USA, #ab37168). Blots were then stained with appropriate secondary antibodies conjugated to horseradish peroxidase (HRP) (#AS1058, Aspen), and proteins were detected with a chemiluminescence detection system. Each experiment was repeated three times.
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9

Protein Expression Analysis in Cell/Callus Samples

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Lysis buffer (#AS1004, Aspen, South Africa) containing 1% protease inhibitor (#AS1008, Aspen) was used to lyse cells or callus samples, after which protein was separated via SDS-PAGE and transferred to NC membranes (#IPVH00010, Millipore, USA) that were blocked with 5% nonfat milk and stained overnight at 4℃ overnight with antibodies speci c for collagen I (1:500, Sigma, USA, #ab34710), ALP (1:1000, Sigma, USA,#ab95462), Osteocalcin (1:500, Sigma, USA, #ab93876), RunX2 (1:500, Sigma, USA, #ab23981), SIK2 (1:1,000, Sigma, USA, #SAB1302059 ), SIK3 (1:1,000, Sigma, USA, #SAB3500695), and GAPDH (1:10,000, Sigma, USA, #ab37168). Blots were then stained with appropriate secondary antibodies conjugated to horseradish peroxidase (HRP) (#AS1058, Aspen), and proteins were detected with a chemiluminescence detection system. Each experiment was repeated three times.
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10

Protein Expression Analysis in Cell/Callus Samples

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Lysis buffer (#AS1004, Aspen, South Africa) containing 1% protease inhibitor (#AS1008, Aspen) was used to lyse cells or callus samples, after which protein was separated via SDS-PAGE and transferred to NC membranes (#IPVH00010, Millipore, USA) that were blocked with 5% nonfat milk and stained overnight at 4℃ overnight with antibodies speci c for collagen I (1:500, Sigma, USA, #ab34710), ALP (1:1000, Sigma, USA,#ab95462), Osteocalcin (1:500, Sigma, USA, #ab93876), RunX2 (1:500, Sigma, USA, #ab23981), SIK2 (1:1,000, Sigma, USA, #SAB1302059 ), SIK3 (1:1,000, Sigma, USA, #SAB3500695), and GAPDH (1:10,000, Sigma, USA, #ab37168). Blots were then stained with appropriate secondary antibodies conjugated to horseradish peroxidase (HRP) (#AS1058, Aspen), and proteins were detected with a chemiluminescence detection system. Each experiment was repeated three times.
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