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3 protocols using recombinant human rage fc chimera

1

Evaluating HMGB1-RAGE Signaling in Cholangiocytes

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Human immortalized nonmalignant cholangiocyte H69 cells were cultured in 96-well plates (5,000 cells/well) (16 (link)). After 24 hours, cells were cultured with DMEM/F-12 medium/0.5% serum ± pre-treatment with 5 ug/mL recombinant human RAGE-Fc chimera (R&D, Minneapolis, MN) for 1 hour ± 100 ng/mL recombinant human HMGB1 (R&D) for 48 hours. Cellular proliferation was quantified with a colorimetric assay (CellTiter 96Aqueous; Promega). RNA was isolated from H69 cells in different wells using RNeasy Mini Kit (Qiagen, Valencia, CA, USA) and subjected to real-time PCR with the Brilliant III SYBR Green QPCR Master Mix Gene Expression Assay Kit and the Mx3005p system (Stratagene), normalized with GAPDH. Primer sequences are listed in Supplemental Table 8.
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2

Metastatic Potential of HCC Cell Lines

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Three human HCC cell lines with unique metastatic characteristics were investigated. Hep3B cell line with the lowest metastasis potential [19 (link)] was purchased from Cell Bank of the Chinese Academy of Sciences (Shanghai, China); MHCC97L cell line with the moderate metastasis potential and HCCLM3 cell line with the highest metastasis potential were kindly obtained from the Liver Cancer Institute of Fudan University (Shanghai, China) [20 (link), 21 (link)]. All cell lines were maintained in DMEM medium (Gibico), supplemented with 10 % fetal bovine serum (FBS, Gibico), penicillin (100 U/ml), and streptomycin (100 μg/ml). Cells were incubated at 37 °C with 5 % CO2, and were harvested with 0.25 % trypsin/EDTA (Gibico) in their logarithmic growth phase, washed with PBS, and resuspended in new media. The reagents used were as follows: Recombinant human HMGB1 (rhHMGB1) and recombinant human RAGE/Fc chimera, homologs to soluble form of RAGE (sRAGE), utilized as ex-RAGE were purchased from R&D systems (Inc., Minneapolis, MN, USA). The antibodies used were as follows: anti-HMGB1 neutralizing antibody, anti-RAGE neutralizing antibody (Abcam), anti-GAPDH (Cell Signal Technology), anti-NF-κB P50, anti-NF-κB P65, and goat IgG (Santa Cruz).
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3

Comprehensive Biochemical Analysis Protocol

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IMPACT Kit, restriction enzymes, Crimson Taq DNA polymerase and T4 DNA ligase were purchased from New England Biolabs (Frankfurt am Main, Germany). The 2xYT-medium was obtained from Carl Roth (Karlsruhe, Germany). HBS-P+10x Buffer was supplied by GE Healthcare (Freiburg, Germany) and recombinant human RAGE Fc chimera from a mouse myeloma cell line by R&D Systems (Wiesbaden, Germany). Calibration standards for size exclusion chromatography, MGO (40% aqueous solution), sodium pyruvate, and liquid chromatography-mass spectrometry (LC-MS)-grade acetonitrile were purchased from Sigma-Aldrich (Taufkirchen, Germany). GluC and chymotrypsin were supplied by Roche (Mannheim, Germany). 2,5-Dihydroxyacetophenone (DHAP) and protein and peptide calibration standards for matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF)-MS were obtained from Bruker Daltonik (Bremen, Germany). All other chemicals were, unless otherwise noted, purchased from Sigma-Aldrich or Acros (Geel, Belgium) and were at least of analytical grade. H2O was purified water from a Synergi-185 laboratory water system (Millipore, Schwalbach, Germany).
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