The largest database of trusted experimental protocols

9 protocols using anti cd9

1

Labeling and Characterizing Extracellular Vesicles

Check if the same lab product or an alternative is used in the 5 most similar protocols
Forty-five μL of serially centrifuged secretome were supplemented with 5 μL of 10 μM CFSE (1 μM final) and incubation performed in the dark at 37 °C for 1 h. After addition of 50 μL PBS, one fifth of the labeled secretome was stored at 4 °C, whereas the rest was divided into 4 aliquots and each (20 μL) stained for 30 min at 4 °C in the dark with 1 μL of the following APC-conjugated Ab: anti-CD9 (312107, BioLegend), CD63 (353007, BioLegend), CD81 (349509, BioLegend) and CD73 (344005, BioLegend). Antibodies were used individually. After incubation, 80 μL PBS were added to each sample and events collection was performed with a CytoFLEX flow cytometer at 10 μL/min flow rate. Flow cytometer was set with reference Megamix-Plus SSC beads (Biocytex, Marseille, France) composed of FITC fluorescent spheres (160 nm, 200 nm, 240 nm, and 500 nm). FITC threshold was set at 500 to include 160 nm beads and some smaller debris in the FITC/CFSE channel.
+ Open protocol
+ Expand
2

Exosome Immunofluorescence Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
To bind the exosomes, coverslips were pre-treated with Poly-L-ornithine solution (1:10 dilution, Sigma Aldrich, P4957) for 24 hours at 37°C. The exosomal samples were allowed to settle and bind to the coated coverslips for 24 hours at 4°C. Samples were then washed three times with PBS and fixed with 4% paraformaldehyde (PFA) for 20 min at room temperature (RT). The exosomal samples were sequentially incubated with primary (Anti-CD9, at dilution 1:500, cat: 312102 Biolegend) and secondary antibodies (Rhodamine TRITC AffiniPure Goat Anti-Mouse IgG H+L, at dilution 1:200, cat:115025003, Jackson Immunoresearch Inc) overnight at 4°C and for 1 hour at RT respectively. Unbound antibodies were removed by washing in PBS and then imaged using Zeiss Axio Observer microscope.
+ Open protocol
+ Expand
3

ELISA for EV-Associated IL35 Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ELISA assay for extracellular vesicle-associated IL35 was done using
a modification of the method of Logozzi et al.
(2009)
. Half-area-well microtiter plates were coated with various
capture antibodies at 10 ug/ml each in 10 mM TRIS (pH 9) and incubated overnight
at 4°C. After blocking plate in 2% bovine serum albumin in PBS for 3
hours at room temperature, tested samples were added and plates were incubated
overnight at 4°C. Wells were washed and bound target antigen was detected
with biotinylated anti-tetraspanin monoclonal antibodies (either anti-CD81
(Thermo Fisher, MA5-17938), or anti-CD9 (Biolegend, MZ3) at 1ug/ml
concentration. After 3 hours of incubation at room temperature, wells were
washed and solution containing HRP-conjugated avidin was added at 1:1000
dilution. After 45 min incubation, wells were washed and a solution containing
TMB was added. The enzyme reaction was stopped after 5-10 minutes with TMB stop
solution. Color development was read at 450 nm.
+ Open protocol
+ Expand
4

Exosome Isolation and Characterization from Cell Lines

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary myeloma cells, myeloma cell lines and breast cancer cell line were used for exosome production. In brief, cells were cultured in respective media with microvesicle-free fetal bovine serum for 48 hours. Conditioned media was collected, centrifuged twice at 3000 rpm for 10 min to remove debris. The supernatant was centrifuged at 100000 × g for 60 min to collect exosomes.
The pellet containing exosomes was resuspended in 1 × PBS buffer. They were examined by transmission electron microscopy (High Resolution Electron Microscopy Facility at Xiamen University). The hydrodynamic size distribution of exosomes were determined by dynamic light scattering (DLS) system. Purified exosomes were incubated with 4 μm-diameter aldehyde/sulphate latex beads (Interfacial Dynamics) in PBS buffer overnight at 4°C. Exosome could be stained with exosome marker antibodies, anti-CD9 (BioLegend) or anti-CD63 (BioLegend) for 30 min at 4°C, and analyzed using flow cytometer (BD Biosciences).
+ Open protocol
+ Expand
5

Antibody Panel for Extracellular Vesicle Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies (Abs) were used in the experiments of this study: anti‐CD9 (BioLegend, Cat# 312102; San Diego, CA, USA), anti‐CD63 (Novus Biologicals, Cat# NBP2‐42225; Centennial, CO, USA), anti‐CD81 (BioLegend, Cat# 349502), anti‐IGF1R (ganitumab, a kind gift from Dr. J.C. Williams), anti‐cytochrome C (BD Biosciences, Cat# 556432; Franklin Lakes, NJ, USA), anti‐syntenin (Abcam, Cat# ab19903; Waltham, MA, USA) and anti‐ApoA1 (Abcam, Cat# ab52945) Abs, as well as goat anti‐rabbit (anti‐rabbit IgG; Invitrogen, Cat# A16112; Waltham, MA, USA), IRDye 800CW goat anti‐mouse (Li‐Cor Biotechnology, Cat# 926–32210; Lincoln, NE, USA) and IRDye 680RD goat anti‐rabbit (Li‐Cor Biotechnology, Cat# 926–68071) secondary Abs. For ExoView experiments, fluorescently labelled anti‐CD9‐CF488A, anti‐CD63‐CF647 and anti‐CD81‐CF555 Abs from the manufacturer's kit were used (details below). Human lactadherin (MFG‐E8), aa Leu24‐Cys387 (contains both C1 and C2 domains) was purchased from Novus Biologicals (Cat# 2767‐MF‐050).
+ Open protocol
+ Expand
6

ELISA for Exosomal TGFβ1 Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ELISA for exosome-associated TGFβ1 was done using a modification of the methods of Logozzi et al10 (link) and Sullivan et al.1 (link) Half-area, high binding microtiter plates were coated with capture antibodies to LAP-TGF-β1 (BioLegend, Clone TW7-16B4); LTBP I, II, or III (Bioss Antibodies); GARP (Biolegend F011-5); or TGFβ1 (Abcam) at 10 µg/mL each in 10 mmol/L TRIS pH9 and incubated overnight at 4 °C. After blocking plate with 2% BSA in PBS for 3 h at room temperature, tested samples were added, and plates were incubated overnight at 4 °C. Wells were washed, in PBS/0.1%BSA, and bound target antigen was detected with the following biotinylated anti-tetraspanin monoclonal antibodies: anti-CD81 (Thermo Fisher, MA5-1793), anti-CD9 (Biolegend, MZ3), or anti-CD63 (Biolegend, NVG-2) at 1 µg/mL concentration. After 3 h of incubation at room temperature, wells were washed, and HRP-Streptavidin (Biolegend) was added at 1:1000 dilution. After 45 min incubation, wells were washed, and a solution containing 3,3′,5,5′-tetramethylbenzidine (TMB) was added. The reaction was stopped after 10 min with TMB stop solution, and color development was read at 450 nm.
+ Open protocol
+ Expand
7

Exosome Biomarker Quantification using ExoView

Check if the same lab product or an alternative is used in the 5 most similar protocols
For analyzing expression of EV biomarkers and EV quantification the ExoView R100 platform (NanoView Biosciences, Boston) was used. Human ExoView Tetraspanin (EV-TETRA-C) kit was used for the analysis. The samples (EV, total sweat and patch) were processed according to the manufacturer's protocol. 1 µg of protein samples were carefully loaded onto each chip and incubated for 24 h. After that, the chips were washed three times on an orbital shaker to remove unbound particles. The chips were incubated for one hour with the human anti-CD81 (BD Pharmingen 555675), anti-CD63 (BD Pharmingen 556019), and anti-CD9 (Biolegend V P018) fluorescently labelled antibodies. Mouse IgG (Biolegend 400101) were used as controls. The immunostained chips were washed three times in PBS, once in deionized water and dried. Imaging and data acquisition of the stained chips were performed with the ExoView R100 (NanoView Biosciences) and the data analysis with the ExoViewer 3 (NanoView Biosciences).
+ Open protocol
+ Expand
8

Cell Surface Marker Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze cell surface maker expression, the cells were incubated with specific antibodies for 30 min at room temperature. The following antibodies were used: anti‐CD45 (eBioscience, 30‐F11), anti‐CD11b (Biolegend, M1/70), anti‐Ly6G (eBioscience, RB6‐8C5), anti‐CD9 (Biolegend, MZ3) and anti‐CD47 (Biolegend, miap301).
+ Open protocol
+ Expand
9

Fabrication of Extracellular Vesicle Sensors

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 1D grating structure was produced by the replica molding approach using a 555.5 nm-period silicon grating (LightSmyth Technologies) as the mold and optical adhesive (NOA 86, Norland Products) on a plastic sheet. The replicated grating was coated with a 100 nm TiO 2 film using an electron beam evaporator. The fabricated PC sensors were cut into 12.7 mm-diameter disks and attached to glass sample tubes using a UV epoxy. To coat the fabricated PC sensor with selective ligands, the PC sensor was functionalized using a two-step process. The first step was to treat the TiO 2 surface using polyvinylamine (PVAm, BASF), which provided amine functional groups.
Then, a bi-functional linker, glutaraldehyde (GA, Sigma Aldrich), was used to activate the sensor for the attachment of specific antibodies. The capture antibodies, anti-CD63, anti-CD9, and anti-CD81 (BioLegend), were dispensed onto the GA-coated PC sensor at 0.5 mg mL -1 as the EV-specific ligands. GA/BSA was used to block the unspecific binding. The antibody-coated PC sensors can be soaked in PBS and stored at 4 °C for future use.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!