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12 protocols using strep tactin

1

E. coli Rosetta 2 Expression & Purification

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E. coli Rosetta 2 containing one of the respective plasmids was cultivated in 500 ml LB medium supplemented with solution M (50x, 1.25 M NaH2PO4, 1.25 M KH2PO4, 2.5 M NH4Cl, 0.25 M Na2SO4) and solution 5052 (50x, 25% [v/v] glycerol, 10% [w/v] α-lactose monohydrate, 2.5% [w/v] d-glucose) for autoinduction of the expression and antibiotics (34 μg/ml chloramphenicol and 100 μg/ml ampicillin) [44 (link)]. Incubation was done at 26 °C and 120 rpm for 48 h. Subsequent purification of the proteins was performed via Strep-tag II/Strep-Tactin affinity chromatography with 1 ml Strep-Tactin columns (Qiagen, Hilden, Germany) according to Nampally et al. [33 (link)], and the protein concentrations were measured with a Pierce™ BCA Protein Assay Kit (Fisher Scientific, Schwerte, Germany).
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2

Recombinant Protein Production and Purification

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Recombinant proteins were produced and purified as described before [23 (link), 25 ]. Briefly, BTI-TN5B1-4 cells were infected with recombinant baculoviruses at a multiplicity of infection of 10 in serum free SFX insect cell medium. Supernatants were harvested 72 hours post infection and recombinant protein was purified via Ni-NTA (Qiagen) (PR8 HA, HL HA) or via Strept-Actin (Qiagen) resin (Cal09 ST HA) [22 (link), 23 (link), 25 ].
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3

Recombinant Marburg Virus Glycoprotein Production

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Marburg virus GP immunogens used to raise antibodies at Emergent were designed and produced at TSRI. DNA encoding the MARV GPΔmuc ectodomain (residues 1–636 with a mucin deletion of residues 257–425) was cloned into a derivative of the Invitrogen pDisplay vector. In this derivative vector, the PGDFR sequence is replaced by a C-terminal purification tag (either an HA or strep tag). Large-scale production was performed by PEI transfection (Polysciences, Inc MW 25,000) of plasmid into 70% confluent HEK293 GnTI-/- cells (ATCC) in Corning 10-layer Cellstacks. Supernatants were harvested four days post-transfection, concentrated with a Centramate tangential flow system, and affinity purified using Streptactin (Qiagen) or anti-HA 3F10 (Roche) affinity resin. Trimeric GPΔmuc was then isolated by S200 size exclusion chromatography (SEC) in 10 mM Tris, 150 mM NaCl, pH 7.5 (1x TBS). In order to improve furin cleavage processing during expression, which decreased aggregation and improved yield of purified trimers, bulky hydrophobic residues near the furin cleavage site were mutated in the GPΔmuc constructs. Ravn GPΔmuc mutations included F438L, W439A, F445G, F447N and Angola GPΔmuc mutations included W439V, M444A, F445G.
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4

Purification and Co-expression of AspAT Variants

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The wild‐type PfAspAT ORF was re‐cloned into pASK‐IBA3 and the resulting plasmid‐encoded full‐length PfAspAT‐WT with C‐terminal Strep‐tag. The His6‐tagged PfAspAT‐Y68A/R257A double mutant was sub‐cloned into pACYC184 vector (NEB) containing the expression cassette of pJC40 to allow co‐expression of the WT and mutant version in E. coli. The co‐expression of Strep‐tagged PfAspAT‐WT and His6‐tagged PfAspAT‐Y68A/R257A was performed using co‐transformed BLR (DE3) competent cells induced with both IPTG and AHT. The co‐purification was performed via the Strep‐tactin as well as via Ni‐NTA agarose (Qiagen). The co‐purified proteins were visualized by western blot using a monoclonal Strep‐tag II antibody (IBA) or anti‐His antibody (Pierce, USA) and a secondary anti‐mouse horseradish peroxidase‐labeled goat antibody (Bio‐Rad, Germany).
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5

Affinity-based Purification and Interaction Analysis

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PrS-TopAI and PrS containing only a His-tag were purified using Ni-NTA and PrS2-YjhQ-Stp containing only Strep-tag was purified with Strep-tactin (Qiagen) following the manufacture's protocol. The PrS2-YjhQ-stp was incubated with PrS-TopAI and PrS in buffer A at 4°C for 30 min, respectively. Ten microliters of Ni-NTA resin were added to each mixture and the final mixtures were incubated for another 1 h. The resin containing the complexes was washed three times with 1 ml of buffer A containing 0.1% Triton X-100 and re-suspended in 50 μl of 1× SAB for 10 min, and the suspended mixture was kept in a boiling water bath for 5 min. The samples were separated on a 12.5% SDS-PAGE, and visualized by western blot analysis using anti-His antibody (Clontech) and anti-NWSHPQFEK antibody (Genscript), respectively.
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6

Purification of Soluble GPCR Variants

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The method to express soluble GPCysRRLL-LPETG-Strep or GPCysRRLL-1NOG-His is similar to the expression of full-length GPC with the BacMam system. However, in contrast to cell pellet harvest, the culture supernatant was harvested 72 hours after BacMam transduction. The GPCysRRLL-LPETG-Strep or GPCysRRLL-1NOG-His in supernatant was purified with Strep-tactin or Ni-NTA affinity columns (Qiagen) and Superdex 200 increase 10/300 column (GE Healthcare).
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7

Protein Purification and Characterization

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Processed RFPStrep was purified from ND‐1 and SC‐1 cell extracts using Strep‐Tactin chromatography (Qiagen, Hilden, Germany) according to the procedure published previously (Zhang et al., 2015). Unbound flow‐through from the Strep‐Tactin column was subject to hydrophobic interaction chromatography, followed by immobilized metal affinity chromatography (GE Healthcare, Marlborough, MA) for purification of processed GFP172 as described previously (Peckham et al., 2006; Zhang et al., 2015). Purified GFP172 and RFPStrep were further processed using SDS‐PAGE and blotted onto PVDF membrane. Target protein bands were excised for N‐terminal amino acid sequencing using Edman degradation approach (performed by the Protein Facility at Iowa State University). ESI‐TOFMS analysis of purified processed GFP172 protein was carried out as described previously (Zhang et al., 2015).
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8

Affinity-based Protein Complex Isolation

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Protein (0.5–3 µg) was immobilized on either glutathion (Sigma), Strep-Tactin (Qiagen), or Flag (Sigma) beads; incubated with protein analyte in buffer B2 (20 mM HEPES at pH 7.9, 150 mM NaCl, 5 mM MgCl2, 0.1% Tween-20, 10% glycerol, 0.2 mM EDTA, 10 mM DTT, 0.1 mg/ml BSA, 1× complete protease [Roche]); and incubated for 1 h at 4°C. The resulting protein complexes were washed four times, and their composition was analyzed by Western blot.
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9

Purification of Topoisomerase Proteins

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pET-PrS-topAI, pCold-PST-topAI, pET-topB, pET-topA, pET-topA67 and pET-topA14 were introduced into E. coli BL21(DE3) to purify N-terminal His-tagged PrS-TopAI, PrS2-TopAI, TopB, TopA, TopA67 and TopA14, respectively. The expression of these proteins was induced with 1 mM isopropyl-β-D-1-thiogalactoside (IPTG) for 3 h at 37°C. The His-tagged proteins were purified with use of Ni-NTA agarose (Qiagen) following the manufacture's protocol. PrS-YjhQ-Stp was also expressed as described above and purified with Strep-tactin (Qiagen) following the manufacture's protocol.
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10

Purification of S. cerevisiae Cohesin Complex

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S. cerevisiae cohesin (Smc1, Smc3, Rad21, and Scc3), Scc2-Scc4 complex, Pds5, and Wapl were amplified by polymerase chain reaction (PCR) using genomic DNA as templates and cloned into a modified pFBDM vector with a double Strep-tag II (ds) and a tobacco etch virus (TEV) cleavage site at the N terminus of Rad21, the C terminus of Scc2, the C terminus of Pds5, and the C terminus of Wapl respectively. The resultant protein expression cassettes were recombined with the DH10MultiBac cells to create the corresponding bacmids. S. cerevisiae cohesin was expressed using the baculovirus/insect cell (Sf21) systems whereas the Scc2-Scc4, Pds5, and Wapl were expressed using Hi5 insect cells. All proteins were purified by Strep-Tactin (Qiagen), anion exchange chromatography Porous Q, and S200 size-exclusion chromatography (GE Healthcare).
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