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36 protocols using whatman 903

1

Dried Blood Spot DNA Extraction

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During each visit, whole blood was collected on dried blood spot cards (DBS, WhatmanTM 903, GE Healthcare Bio-Sciences Corp., Chicago, IL, USA), dried, and then stored in a sample repository at −80 °C. Whole blood DNA was extracted from one spot using a QIAamp DNA Mini Kit in a Qiacube automate (QIAGEN), following the manufacturer’s instructions. DNA extracts were then stored at −80 °C.
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2

Quantifying Mitochondrial Copy Number and Deletion Rates

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A detailed description of the assays has previously been published [8 (link)]. Succinctly, blood samples were collected on dried blood spot cards (DBS, WhatmanTM 903, GE Healthcare Bio-Sciences Corp.) and DNA was extracted using QIAamp DNA Mini kit (Qiagen, Courtaboeuf, France). Mitochondrial copy number (MCN) was assessed by real-time quantitative PCR using QuickScanTM Mitox kit (Primagen©, Amsterdam, The Netherlands). The MCN is expressed as the number of mtDNA cp/cell. The percentage of MDD was obtained by relative quantification of two qPCRs (2-ΔΔCt method), one targeting the region which encompasses more than 85% of the known mtDNA deletions and one targeting a very constant region, using DNA extracted from plasma-rich platelets as a calibrator. The MDD rate is the ratio of mutated mtDNA to total mtDNA and is expressed as a percentage [8 (link)].
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3

Dried Blood Spot HIV-1 Detection

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At the same time as POC testing, nurses collected an additional 4–5 drops of whole blood onto filter paper cards (Whatman 903, GE Healthcare Biosciences, Pittsburgh, PA, USA) to create DBS specimens. Specimens were dried at room temperature before being packaged for transport to the reference laboratory. Samples were tested using the gold standard Roche COBAS AmpliPrep/COBAS TaqMan (CAP/CTM 96) HIV-1 Qualitative Test (Roche Molecular Diagnostics, Branchburg NJ, USA) or Roche Amplicor HIV-1 DNA test, version 1.5 (Roche Molecular Diagnostics, Branchburg, NJ) according to the manufacturer’s instructions. These tests detect total HIV-1 total nucleic acid (DNA and RNA) when used on whole blood samples extracted from DBS cards [11 (link)–13 ]. Laboratory testing was conducted by three technicians who were trained and certified to run the assays. The reference laboratory had routinely participated in and passed an EID external quality assessment program (provided by the Centers for Disease Control and Prevention, Atlanta, USA) prior to and during the study.
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4

Evaluation of Pneumococcal Detection in Blood

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The two papers selected for performance evaluation included the Whatman 903 and FTA classic cards (GE Healthcare Bio-Sciences, Pittsburgh, PA). S. pneumoniae isolates were suspended in phosphate buffered saline (PBS) to 0.5 McFarland, equivalent to 108 CFU/mL [13 ]. These isolates were spiked into whole blood collected in sodium citrate tubes, and ten-fold serial dilutions of whole blood were prepared ranging from 0.5-5x104 CFU/μL of blood. In addition, dilutions at 2 and 20 CFU/μL were prepared, based on previous studies identifying a detection limit in bacterial PCR within this range [14 (link)–16 (link)]. Hence, there were a total of 8 dilutions tested per serotype. Next, 100 μL from each dilution was spotted onto Whatman 903 and FTA filter paper until soaked through. Blood spots were allowed to dry overnight on the benchtop and then stored in sealed plastic bags at room temperature. We used as negative controls 9 strains of other bacterial species that are associated with invasive disease, as well as non-spiked samples of whole blood.
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5

P. vivax Isolates Collection and Verification

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P. vivax isolates were collected between 2009 and 2020 from six different geographic sites in China. Finger-prick blood was spotted on filter paper (Whatman™ 903, GE Healthcare, USA) and dried. All patients were diagnosed as P. vivax using a microscopic examination and reconfirmed using polymerase chain reaction (PCR) by amplifying the small-subunit rRNA gene of Plasmodium spp [20 (link)]. Written informed consent was obtained from the patients prior to blood collection. This study was approved by the Ethical Review Committee of National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention.
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6

Dried Blood Spot Sampling for Hepatitis C

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Fifty microliters of venous whole-blood collected in ethylene diamine tetraacetic acid tube was spotted onto the filter paper card (Whatman 903; GE Healthcare Europe, Freiburg, Germany). The filter paper was dried at ambient temperature, stored in an individual sealed plastic bag with a desiccant package at − 20 °C. DBS samples collected from the Montpellier University Hospitals were stored at − 20 °C until used. Samples from the Viet Tiep hospital in Haiphong were defrosted and transported at ambient temperature during 72 h, and stored again at − 20 °C for a mean duration of 18 months until HCV RNA and HCVcAg testing.
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7

Whole Blood and Plasma Sampling on Filter Paper

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Whole blood was drawn into EDTA or CPT tubes (Vacutainer, BD). 2 × 25 μL whole blood was spotted directly onto Whatman 903 filter paper (GE Healthcare) before the remaining whole blood was centrifuged within 30–40 minutes after collection to obtain plasma (EDTA tubes at 3000 × g for 10 min at room temperature (RT), and CPT tubes at 1800 × g for 20 min at RT). Afterwards, 2 × 25 µL plasma was spotted onto another Whatman 903 filter paper. The remaining plasma was stored at −80 °C. The filter papers were left to dry for 3–4 hours at RT before placed in zip-locked plastic bags with desiccants, and stored at −20 °C. The filter paper cards were transported at room temperature and the plasma samples on dry ice to Bergen, Norway, for analysis.
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8

Blood Spot Collection and Storage

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Two blood spots were collected from each participant, transferred on filter paper (Whatman #903, GE Healthcare) labelled with the participant’s study code and date. Each filter paper was dried individually to avoid any chance of contamination. The samples were then stored in small plastic bags with desiccant and transported to the Institute of Specific Prophylaxis and Tropical Medicine, Medical University of Vienna (MUV), Vienna, Austria for molecular analysis.
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9

Cross-sectional malaria study in Ethiopia

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EMIS-2015 was a cross-sectional survey, which used a two-stage cluster sampling methodology [20 ]. Enumeration Areas (EA), the sampling unit, were selected proportional to population size and 25 households were selected by simple random sampling from each EA. Demographic, socioeconomic, malaria prevention, and malariometric data were also collected in the selected households. All children under 5 years of age in selected households and persons of all ages in every 4th household were eligible for biological sample collection and testing [20 ]. Whole blood from a single finger prick from consenting individuals (with or without fever) was collected for Plasmodium infection identification by RDT and microscopy, haemoglobin testing (Hemocue Hb 201+, Hemocue AB, Ängelholm, Sweden) and for collection of DBS samples. Whatman 903 (GE Healthcare, Pittsburgh, PA) filter paper cards were used for DBS collection. These were air dried, individually packed in a plastic bag together with a desiccant and stored at − 20 °C at EPHI before they were sent to the U.S. Centers for Disease Control and Prevention (CDC) in, Atlanta, Georgia, for processing.
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10

Malaria Recurrence Monitoring Protocol

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During screening, a G6PD test was carried out on all patients, and a pregnancy test on all adult females. At enrolment, patients had a medical examination, a questionnaire was completed, and a capillary blood sample was collected for blood film examination and Hb measurement. Three 50-μl capillary blood spots were stored on filter papers (Whatman 903 and Whatman 3; GE Healthcare Biosciences, Westborough, MA, US). In consenting patients, venous blood samples were collected at enrolment and, if malaria recurred, on the day of recurrence.
Patients were asked to return for routine assessment daily for the first 3 d, then weekly until day 42, and thereafter monthly for an additional 10 mo. Patients were also asked to return to the clinic if they had signs or symptoms consistent with malaria, and those with recurrent clinical P. vivax malaria occurring more than 14 d following treatment received the same treatment as that allocated at enrolment, with subsequent follow-up according to the initial schedule.
A follow-up medical exam and blood film examination was undertaken on days 1, 2, 3, 7, 14, 21, 28, 35, and 42, and monthly thereafter for 10 mo. Adverse drug reactions and concomitant medications were recorded at every visit, with repeat Hb concentration measured on days 3, 7, 14, 21, 28, 35, and 42.
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