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25 protocols using cm dcfda

1

Measuring Cellular Oxidative Stress

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C26.WT cells were cultured in a 24-well plate at a concentration of 100,000 cells/well. Then, the accumulation of ROS within cells was measured by labelling cells for 1 h at 37°C and 5% CO2 with 10 µM 5,6-chloromethyl-20,70-dichlorodihydrofluoresceindiacetate (CM-DCFDA; Molecular Probes; Thermo Fisher Scientific, Inc.; cat. no. C6827). The total cell number was determined by staining cells with 5 µl/ml Hoechst (Molecular Probes; Thermo Fisher Scientific, Inc.; cat. no. H1398) for 1 h at 37°C and 5% CO2. Finally, fluorescence was measured using a Fluoroskan Ascent plate fluorimeter (Thermo Labsystems, Santa Rosa, CA, USA), and data are expressed as a normalized percentage of CM-DCFDA/Hoechst fluorescence.
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2

Measuring Intracellular ROS Generation

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ROS generation was analyzed by chloromethyl dichlorodihydrofluorescein diacetate (CM-DCF-DA, Molecular Probe, OR). One day before the cells were plated on 96-well Optical Btm Plt PolymerBase White/Lid Cell Culture Sterile PS (Thermo Fisher Scientific, Rochester, NY) at the concentration of 5000 cells/well. After washing with PBS, the cells were treated with 1 μM CM-DCF-DA for 15 min, and the fluorescence (excitation 485 nm, emission 538 nm) was measured spectrofluorometrically with a Fluoroskan Ascent® FL system (Thermo Fisher Scientific, Vantaa, Finland). The cells were also observed under an Eclipse TE300 fluorescence microscope.
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3

Evaluation of Apoptosis and Stemness

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Hoechst 33342, verapamil, glutaminase, L-asparaginase, and 3-Amino-1,2,4-triazole (ATZ), 3-(4,5 dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT), hydroethidine, Rhodamine 123 were purchased from Sigma (St Louis, MO, USA). Rabbit monoclonal anti-Axin2 (D48G4), rabbit monoclonal anti-Survivin (71G4B7), rabbit polyclonal anti-phospho-β-catenin (Ser33/37/Thr41), rabbit monoclonal anti-phospho-Akt (Ser473) antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Mouse monoclonal anti-c-Myc (9E10) was purchased from Santa Cruz (Santa Cruz, CA, USA). Rabbit polyclonal anti-CyclinD1 antibody was obtained from GeneTex (San Antonio, TX, USA). Mouse monoclonal anti-β-catenin (C47H1), rabbit monoclonal anti-Sox-2, rabbit monoclonal anti-ABCG2, and mouse monoclonal anti-β-actin antibodies were purchased from Abcam (Cambridge, UK). CM-DCFDA, Lipofetamine RNAiMAX and Opti-MEM were purchased from Invitrogen Life Technologies (Carlsbad, CA, USA).
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4

Intracellular ROS and Superoxide Detection

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Intracellular ROS (H2O2) contents were measured by incubating cells with 5 μM CM-DCFDA (Invitrogen) at 37°C for 1 h followed by detection using flow cytometry (Beckman Coulter). Intracellular superoxide level was measured by incubating cells with 5 μM MitoSOX (Invitrogen) at 37°C for 1 h before detection by flow cytometry analysis.
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5

Intracellular ROS Measurement Assay

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C4-2 NS or PXDN knockdown cells were cultured to approximately 80% confluency. Cells were trypsinized, counted and re-suspended in 20 µM of CM-DCFDA (Invitrogen, Eugene, OR, USA) and incubated at 37 °C for 1 h. The reaction was stopped on ice and the cells were centrifuged. 1 × 104 cells resuspended in PBS were plated in a black walled 96-well plate and read immediately at 485 nm excitation and 535 nm emission.
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6

ROS Regulation in hRMVECs by VEGF

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hRMVECs were seeded into 96-well plates and transfected with siRNA. Forty-eight hours post-transfection, cells were loaded with 5 µm 5-(and-6)-chloromethyl-2',7'-dichlorodihydrofluorescein diacetate, acetyl ester (CMDCF-DA; Invitrogen) in serum- and growth factor-free medium for 30 min at 37 °C. After two washes with PBS, cells were incubated with VEGF (20 ng/ml) or control PBS for 30 min. ROS generation was measured in a fluorescent plate reader (excitation-488 nm and emission-520 nm). Cells incubated with 10 µM H2O2 were used as a positive control.
For the proliferation assay, 24 h post-transfection, cells were starved in serum- and growth factor-free medium for 24 h and then incubated with VEGF (20 ng/ml) for another 24 h. Cell number was measured with Vybrant 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell proliferation assay kit (Invitrogen).
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7

Mitochondrial Oxidative Stress Assays

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Menadione, N-ethylmaleimide (NEM), rotenone, and antimycin A were from Sigma-Aldrich. Topotecan and Mito-TEMPO were from Enzo Life Sciences. MitoSOX and CM-DCFDA were from Invitrogen. MitoPY1 was from Tocris (4428).
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8

Quantifying Mitochondrial and Cellular ROS

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Mitochondrial ROS and intracellular ROS in BUMPT cells were determined by using Mito-SOX Red (Thermo Fisher Scientific, M36008) and by CM-DCFDA (Invitrogen, C6827), respectively. ROS in kidney tissues was measured by dihydroethidium (Thermo Fisher Scientific, D11347) staining as previously described (26 (link)). Briefly, after harvesting, kidneys were snap frozen by liquid nitrogen. 20 mm sections of the kidneys were incubated with 10 mM DHE in a humidified and dark chamber at 37°C for 30 min and then counterstained with DAPI (Sigma-Aldrich, D9542). Images of the above staining were captured with fluorescence microscopy. For quantification, the fluorescence intensity in the nuclei of proximal tubular cells within 10 random optical sections was determined with ImageJ software. At least 10 randomly selected fields per mouse and four mice for each group were examined.
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9

Measuring Oxidative Stress via DCFDA

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Prior to treatments, cells were washed and incubated with 2 μM CM-DCFDA (Life technologies, Grand Island NY) for 10 minutes followed by a wash in PBS and then recovery in DMEM for 15 min. Cells were then treated as described in figure legend. After trypsinizing, single cells were processed by flow cytometry to detect DCFDA fluorescence and mean fluorescence intensity was calculated as % increase of vehicle control.
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10

Quantifying Cellular Reactive Oxygen Species

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Cells were washed with PBS and seeded in a 96-well plate at 2.105 cells per well in a 200 μL reaction volume, in the presence or absence of DPI (20 μM) (Sigma-Aldrich, Saint-Quentin-Fallavier, France). DMSO was used as a vehicle control. Cytoplasmic ROS and intracellular superoxide production was detected with 5-(and-6)-chloromethyl-2′,7′-dichlorodihydrofluorescein diacetate (CM-DCFDA) (Life Technologies) and dihydroethidium (DHE) (Invitrogen, Villebon sur Yvette, France), respectively, each at a concentration of 5 μM per well. ROS production was measured kinetically for CM-DCFDA (λex = 483-14 nm, λem = 530-30 nm) and DHE (λex = 490-15 nm, λem = 600-20 nm) every minute for 1 h at 37 °C using a CLARIOstar plate reader (BMG Labtech, Champigny-sur-Marne, France). ROS production rates (RFU/min) were calculated via the CLARIOstar data analysis software, using the slope of the curve at steady state.
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