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Softmax pro version 5

Manufactured by Molecular Devices
Sourced in United States

SoftMax Pro Version 5 is a software package designed for data acquisition and analysis of microplate-based assays. It provides users with tools to collect, analyze, and present experimental data from compatible Molecular Devices instruments.

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16 protocols using softmax pro version 5

1

CRP and PTX3 Measurement in Plasma

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CRP was measured with high‐sensitivity technique (detection limit 0.15 mg/L), performed by turbidimetry, at the Clinical Chemistry laboratory of the University Hospital in Linköping.
A DuoSet enzyme-linked immunosorbent assay (ELISA; detection limit 0.22 µg/L) kit was used to analyze PTX3 levels in plasma (R&D Systems, Minneapolis, MN, USA). Assays were performed according to the manufacturers’ instructions as previously described (29 (link), 30 (link)). Briefly, Costar (Corning, NY, USA) half‐area plates were coated with 2 µg/mL of mouse anti‐human PTX3 and incubated overnight. Plates were blocked by 1% bovine serum albumin in PBS for 1 h and incubated thereafter with samples and standards for 2 h. Biotinylated goat anti‐human PTX3 (60 ng/mL) was added and incubated for 2 h, followed by addition of streptavidin horseradish peroxidase (R&D Systems) diluted 1:40 and another 20 min of incubation. Plates were developed with tetramethylbenzidine substrate and the reaction was stopped by adding 1 M H2SO4. All incubations were performed at room temperature. Plate reader VersaMax (Molecular devices, San Jose, CA, USA) and software SoftMax Pro version 5.4.1 (Molecular devices) were used.
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2

Evaluating Immune Responses to Scrub Typhus Vaccination

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Serum and bronchoalveolar lavage (BAL) fluid were collected 7 days after the last vaccination and specific Ab titers against OMPOT or O. tsutsugamushi were measured by ELISA. Briefly, 96-well Maxisorp plates (Nunc) were coated with 1 μg/ml of recombinant OMPOT or 1.2×104 ICU/ml of O. tsutsugamushi and incubated overnight at 4°C. After blocking with PBS containing 1% BSA (Invitrogen) for 1 h at 37°C, sera and BAL fluid were serially diluted in blocking buffer to each well and incubated for 2 h at 37°C. HRP-conjugated goat anti-mouse IgG and IgA Abs (Southern Biotechnology Associates, Birmingham, AL, USA), diluted in a ratio of 1:3,000 in 0.1% BSA in PBS plus 0.05% Tween-20, were added and incubated for 1 h at room temperature. 3,3′,5,5′-Tetramethylbenzidine (Millipore, Burlington, MA, USA) were added for the color reaction and stopped by adding 50 μl of 2N H2SO4. The absorbance at wavelength 450 nm was measured by a microplate reader (Molecular Devices, San Jose, CA, USA) and endpoint titers were determined by the value of 0.2 and expressed as reciprocal log2 titer by using Softmax pro version 5.4.1 (Molecular Devices).
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3

Quantifying IL-1β in Cell Cultures

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Cell culture supernatants were collected and stored at −80°C until use. ELISA kits detecting human IL‐1β were obtained from R&D systems. Assays were performed according to the manufacturer's instructions using a sample volume of 100 μL. Absorbances at 450 or 490 nm in the LDH release assays, with a correction wavelength of 610 nm, were detected on a SpectraMax M2 fluorescence microplate reader using SoftMax Pro version 5 Software (Molecular Devices). Measurements were performed in duplicate.
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4

Quantification of Human IL-1β Release

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Human IL-1β protein released into the supernatant was measured using ELISA MAX Deluxe kits (BioLegend), according to the manufacturer’s instructions. Signal from ELISA plates was read with a Spectra Max Plus 384 plate reader (molecular Devices, San Jose, CA) using SoftMax Pro Version 5 software (molecular Devices), and the threshold of detection was 0.5 pg/ml.
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5

ELISA-based Detection of Autoantibodies and Soluble Factors

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Anti-AT1R and anti-ETAR Aabs were detected by using a commercially available sandwich ELISA (One Lambda) as described previously [2 (link)]. Because serum levels can differ from those of purified IgG, we tested Aab levels in IgG fractions after purification. Anti-AT1R and anti-ETAR Aab levels of IgG fractions from healthy donors were usually below 10 arbitrary units, whereas those from SSc patients ranged up to 40 arbitrary units.
Supernatants of treated PBMCs were collected after 8 and 20 hours, respectively, depending on the outcome parameter. Cytokines and soluble proteins were analyzed by performing sandwich ELISAs in a colorimetric detection system with tetramethylbenzidine, hydrogen peroxide and horseradish peroxidase. For the detection of IL-8, renamed chemokine (CXC motif) ligand 8 (CXCL8), the anti-human IL-8 capture antibody H8A5 (Biolegend) and the biotin-coupled detection antibody E8N1 (Biolegend) were used according to the manufacturer’s instructions. To analyze the concentrations of chemokine (C-C motif) ligand 18 (CCL18), transforming growth factor β1 (TGF-β1), soluble CD62 (sCD62) and soluble CD14 (sCD14), duoset kits were used according to the manufacturer’s instructions (R&D Systems, Minneapolis, MN, USA). Absorbance was measured in a microplate reader at 450 nm and analyzed using SoftMax Pro version 5 software (Molecular Devices).
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6

Cytokine Secretion Profiling in Infected Mesothelium

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An infected mesothelium produces inflammatory cytokines, such as tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), monocyte chemoattractant protein-1 (MCP-1), and others. Cell-free supernatants were processed for cytokine secretion by enzyme-linked immunoabsorbent assay (ELISA) kits: vascular endothelial growth factor (VEGF), TNF-α, MCP-1, and IL-1β (R&D Systems, Minneapolis, MN, USA). Absorbance was measured at λ450/540 nm with SpectraMax 190 ELISA-Reader and analyzed with Softmax Pro Version 5.0 (Molecular Devices, San José, CA, USA) software. All samples were analyzed twice.
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7

Cell Viability Assay for Bacterial Infection

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To ensure that the bacterial infection reflected a clinically relevant scenario, cell viability was assessed using a Cytotoxicity Detection Kit (Roche Diagnostics GmbH, Mannheim, Germany) according to the manufacturer’s protocol. Absorbance was measured at λ490 nm with SpectraMax 190 ELISA-Reader and analyzed with Softmax Pro Version 5.0 (Molecular Devices, San José, CA, USA). All samples were analyzed in triplicate.
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8

Quantitative LASV Glycoprotein Binding Assay

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Briefly, Ni2+-NTA microplates (Pierce) were incubated with 30 µl/well the supernatant of LASV GPC variants mixed with 70 µl/well of PBS at 4 °C overnight, followed by blocking with 200 μl/well of CelBooster Cell Growth Enhancer Medium for Adherent Cell for 1 h at RT. Between each subsequent step, plates were washed five times with PBS-T (PBS plus 0.05% Tween 20). After plate wash, 100 µl/well of 10 µg/ml GPC-specific antibody 37.7H was incubated at RT for 2 h. followed by incubation for 30 min at RT with 100 μl/well of horseradish perox- idase (HRP) conjugated goat anti-human IgG antibody (Jackson ImmunoResearch Laboratories Inc., PA), diluted at 1:10,000 (v/v) in CelBooster Cell Growth Enhancer Medium for Adherent Cell plus 0.02% Tween 20. Then, the reaction signal was developed with 100 μl/well of tetramethylbenzidine substrate (BioFX-TMB, SurModics) for 10 min at RT before the addition of 100 μl/well of 0.5 N sulfuric acid (Fisher Chemical) to stop the reaction. Plates were read at 450 nm wavelength (SpectraMax using SoftMax Pro, version 5, software; Molecular Devices, Sunnyvale, CA), and the optical densities (OD) were analyzed following subtraction of the nonspecific horseradish peroxidase background activity. All samples were measured in duplicate.
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9

Hepatic Triglyceride Quantification Protocol

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Hepatic TG levels were quantified as described.14, 17, 18 Briefly, standards and samples were added to a 96‐well, clear, flat‐bottom plate (Costar) containing 200 μL of triglyceride reagent (Pointe Scientific). Hepatic TGs were quantified at 500‐520 nm using the vmax Microplate Reader (Molecular Devices) and SoftMax Pro version 5 software.
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10

Quantifying Acetylcholinesterase Activity

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Acetylcholinesterase (AChE) activity was measured following a procedure described previously [13 (link)]. Briefly, EV samples (100 µL) were mixed with 1.25mM acetylthiocholine in PBS at pH 8 plus 0.1mM 5,5-dithio-bis (2-nitrobenzoic acid) in PBS at pH 7. The resulting suspension (200 µL) was held at room temperature and then warmed to 37°C for 10 minutes for optical density reading. Absorption at 450 nm was monitored for 10 minutes using a plate reader spectrophotometer (Molecular Devices with SOFTmax® Pro version 5, San Jose, CA, USA).
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