The largest database of trusted experimental protocols

8 protocols using p38 mapk

1

Quantitative Analysis of Bone Protein Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total proteins were extracted from other tibias with RIPA Lysis Buffer (Biyuntian, China) containing a protease inhibitor cocktail (Roche, Switzerland). Proteins were separated by 10% SDS-PAGE with 80 to 120 V, and then transferred onto a 0.45 μm PVDF membrane (Millipore, United States) with 300 mA for 2 h. The blotting membranes were blocked with 5% skim milk powder in 1 × TBS-Tween (TBST) for 1 h. After washing with 1 × TBST three times for 10 min once, the blotting membranes incubated with phospho-Smad1 (CST, #9553), Smad1 (CST, #9743), phospho-p44/42 MAPK (CST, #5726), p44/42 MAPK (CST, #9102), phospho-p38 MAPK (CST, #9211), p38 MAPK (CST, #9212), and β-Actin (CST, #5057). The molecular weight and gray value of the target strip were analyzed by the Image J system.
+ Open protocol
+ Expand
2

Multiplex Analysis of Insulin and Cytokine Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Treated myotubes were harvested in Cell Signalling Lysis Buffer (Millipore). The following Map mates were used: p-Akt (Ser473), p-IRS1 (Tyr) and total Akt, IRS1 (Millipore) for insulin signalling analysis; p-IkBα (Ser32), p-JNK (Thr183/Tyr705), p-p38 MAPK (Thr180/Tyr182), p-Erk1/2 (Thr185/Tyr187), p-STAT3 (Tyr705) (all Millipore), p-NFkB p65 (Ser536) (Bio-Rad) and total IkBα, JNK, p38 MAPK, Erk1/2, STAT3 (Millipore) for cytokine signalling; human GAPDH (Millipore) in all multiplex assays for normalization of protein data analysis. Map mates were prepared and combined according to the manufacturer instructions. Phospho- and total Map mates were used in separate assays, but human GAPDH was used in each assay. First, mean fluorescence intensity (MFI) of phospho- and total map mates were normalized to MFI of GAPDH separately, than secondly ratios of phospho-protein to total protein were calculated to compare activation of the signalling pathways.
+ Open protocol
+ Expand
3

Heparanase Activity Assay in Rat Aortic Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rat aortic endothelial cells were obtained from Cell Applications. Streptozotocin and other chemicals were obtained from Sigma. Heparin was from Sandoz (10 000 U/mL). Purified HpaL was prepared as described,28 and HpaA was purchased from R&D (#7570‐GH). Yoda1 and 2‐methylthioadenosine 5′‐triphosphate (2‐MeSATP) were purchased from Tocris Bioscience (#5586 and #1062). The G‐actin/F‐actin In Vivo Assay Biochem Kit was obtained from Cytoskeleton Inc. (Denver, CO). ATP Determination Kit was obtained from Invitrogen (#A22066). [3H]‐triolein was purchased from Perkin‐Elmer (NET431001MC). Anti‐heparanase antibody HP3/17 was from Prospec (Rehovot, Israel), which recognizes both the active (50‐kDa) and latent (65‐kDa) form of heparanase. All other antibodies were obtained from Cell Signaling Technology, Santa Cruz Biotechnology, and Millipore, including phospho‐protein kinase D (pPKD; #2054), total protein kinase D (PKD; #SC‐935), phospho‐P38‐mitogen activated protein kinase (pP38MAPK; #9211), total P38‐mitogen activated protein kinase (P38MAPK; #9212), vinculin (#13901), and α‐tubulin (#05–829).
+ Open protocol
+ Expand
4

Regulation of ILC3 cell signaling pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sorted intestinal ILC3 cells were starved for 3 hours in RPMI at 37°C in order to ensure ILC3 viability. Retfl or RetΔ were analysed directly ex vivo. To test ERK, AKT, p38-MAPK (Cell Signaling Technology) and STAT3 (BD Pharmigen) upon GFL stimulation WT ILC3 were activated with 500ng/mL (each GFL) and co-receptors (rrGFR-α1, rmGFR-α2, rrGFR-α3 and rrGNDF from R&D Systems; rhNRTN and rhARTN from PeproTech) for 10 and 30min. When referring to the use of ‘GFL’, we have employed GDNF, NRTN, ARTN and their specific co-receptors in combination. For inhibition experiments cells were incubated 1h at 37°C before GFL stimulation, to test ERK, AKT, p38/MAPK and STAT3 phosphorylation, or during overnight stimulation with GFLs, to determine Il22 expression levels. Inhibitors were purchased from Sigma-Aldrich: p38 MAPK/ERK-AKT - LY294002 (LY); ERK - PD98059 (PD); AKT - AKT Inhibitor VIII (VIII); p38 MAPK - SB 202190 (SB); and pSTAT3 – S3I-201 (S3I).
+ Open protocol
+ Expand
5

Regulation of ILC3 cell signaling pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sorted intestinal ILC3 cells were starved for 3 hours in RPMI at 37°C in order to ensure ILC3 viability. Retfl or RetΔ were analysed directly ex vivo. To test ERK, AKT, p38-MAPK (Cell Signaling Technology) and STAT3 (BD Pharmigen) upon GFL stimulation WT ILC3 were activated with 500ng/mL (each GFL) and co-receptors (rrGFR-α1, rmGFR-α2, rrGFR-α3 and rrGNDF from R&D Systems; rhNRTN and rhARTN from PeproTech) for 10 and 30min. When referring to the use of ‘GFL’, we have employed GDNF, NRTN, ARTN and their specific co-receptors in combination. For inhibition experiments cells were incubated 1h at 37°C before GFL stimulation, to test ERK, AKT, p38/MAPK and STAT3 phosphorylation, or during overnight stimulation with GFLs, to determine Il22 expression levels. Inhibitors were purchased from Sigma-Aldrich: p38 MAPK/ERK-AKT - LY294002 (LY); ERK - PD98059 (PD); AKT - AKT Inhibitor VIII (VIII); p38 MAPK - SB 202190 (SB); and pSTAT3 – S3I-201 (S3I).
+ Open protocol
+ Expand
6

FPR2-Mediated NADPH Oxidase Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Epithelial anaplastic human lung cancer CaLu-6 and p22phoxCrispr/Cas9 CaLu-6 cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplied with 10% fetal bovine serum (FBS) (Invitrogen Corp., Carlsbad, CA, USA) at 37 °C and 5% CO2. Cells at 70% of confluence were serum deprived for 24 h and stimulated or not with 10 μM WKYMVm (Primm, Milan, Italy). Unstimulated CaLu-6 cells were used as negative control. In other experiments, CaLu-6 cells were preincubated with the selective FPR2 antagonist WRWWWW (WRW4) (Primm, Milan, Italy) for 15 min at a final concentration of 10 μM, or with 100 μM apocynin, the selective inhibitor of NADPH oxidase (Sigma Chemical, St. Louis, MO, USA), for 2 h, or with 50 μM PD09805, a selective inhibitor of MEK (Sigma), for 90 min, or with 10 μM SB203580, a selective inhibitor of p38MAPK (Sigma), for 1 h. FPR2-unstimulated CaLu-6 cells only preincubated with the appropriate amount of the above-mentioned selective inhibitor were used as a negative control of pretreatments.
+ Open protocol
+ Expand
7

Neutrophil Extracellular Traps Against Toxoplasma gondii

Check if the same lab product or an alternative is used in the 5 most similar protocols
PMNs were incubated with viable T. gondii tachyzoites (ratio 1:1, 1:3, or 1:6) for 90 min. To determine if T. gondii-triggered NETs were time-dependent, PMNs were incubated with viable T. gondii tachyzoites (ratio 1:1) for 10, 30, 60, 90, or 120 min. In inhibition tests, cells were pre-treated with 10 μM of the NADPH oxidase inhibitor Diphenyleneiodonium chloride (DPI, Sigma-Aldrich), 10 μM of the p38 MAPK (Sigma-Aldrich) signaling pathway inhibitor SB202190, 100 μM of the Rac1 activation inhibitor NSC23766, or 8.0 nM of the NLRP3 inhibitor MCC950 for 15 min. DNase I (90 U) was also pre-treated with cells for 15 min. Zymosan (1 mg/mL) was used as positive control. Finally, the release of T. gondii-triggered NETs was quantified with Pico Green® (Invitrogen) and the fluorometric reader Infiniti M200® (Tecan, Austria).
+ Open protocol
+ Expand
8

Molecular Signaling in LPS-Induced Inflammation

Check if the same lab product or an alternative is used in the 5 most similar protocols
ST2 cells (3 × 105 cells/mL) were cultured in a Φ 6 cm plate and stimulated with E. coli-LPS (1 μg/mL), EA (3 μg/mL). Western blotting was performed as described previously by Kudo et al. [35 (link)]. In brief, cell pellets were resuspended in ice-cold lysis buffer. Proteins were separated by SDS-PAGE, electro-blotted onto nitrocellulose membrane, and were visualized by the ECL western blotting detection system (GE Healthcare, UK) (Amersham, Piscataway, NJ, USA). The following antibodies from Cell Signaling Technology were used as primary antibodies: p-NF-κB p65 (#3033; 1 : 1,000), NF-κB p65 (#8242; 1 : 1,000), p-p38mitogen-activated protein kinase (p-p38 MAPK) (#4511; 1 : 1,000), p38 MAPK (#8690; 1 : 1,000), p-SAPK/JNK (#4668; 1 : 1,000), t-SAPK/JNK (#9258; 1 : 1,000), p-IKKα/β (S176/180) (#2697S; 1 : 1,000), IKKβ (#2678; 1 : 1,000), and β-actin (#A2228; 1 : 8,000; Sigma-Aldrich). The following antibody from GeneTex was used as the primary antibody: beta catenin antibody [N1N2-2], N-term (#GTX101435; 1 : 1,000).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!