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3 protocols using anti cd8a af700

1

Multiparameter Immune Cell Profiling

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Anti–CD3ε-PerCP (100326), anti–CD8a-AF700 (100730), anti–CD8a-APC (100712), anti–PD-1-PE/DZ594 (109116), anti–Ki67-FITC (652410), anti–TCF1-PE (655208), anti–IFN-γ-BV421 (505830), anti–IFN-γ-PerCp/Cy5.5 (505822), anti–TNF-α-APC/Cy7 (506344), anti–TIM-3-PE/Cy7 (119716), anti–CD45-BV510 (103138), anti–Ly108 (Slamf6)-PE (134606), anti–PD-1-FITC (135214), anti–CD45.1-PE (110708), anti–CD45.2-AF488 (109816), purified anti-mouse CD3ε (100340), and purified anti-mouse CD28 (102116) were obtained from Biolegend. Anti–CD8-FITC (D271-4) and tetramer-SIINFEKL-APC (TS-5001-2c) were purchased from MBL. Cell Stimulation Cocktail Plus Protein Transport Inhibitors and FOXP3/TF Staining Buffer Set were bought from eBioscience. Naive CD8a+ T Cell Isolation and Tumor Dissociation Kits were obtained from Miltenyi Biotec.
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2

Tumor Immune Profiling by Flow Cytometry

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Tumors were collected 3 days after last radiation fraction then were dissociated in DMEM supplemented with 1 mg/ml Collagenase IV (Solarbio) and 1 μl/ml DNase I (Solarbio) at 37 °C for one hour. Single-cell suspensions were collected after filtering digested tissues with 40-um filter and washed with PBS supplemented with 2% FBS. Subsequently, cell surface and intracellular markers were stained with the following fluorochrome-conjugated antibodies: anti-CD45 BV421 (Cat#: 103,134), anti-CD11b PE (Cat#: 101,207), anti-F4/80 AF700 (Cat#: 123,129), anti-CD86 FITC (Cat#: 105,109), anti-CD206 APC (Cat#: 141,708), anti-CD4 BV510 (Cat#: 100,553), anti-CD8a AF700 (Cat#: 100,729) from Biolegend. For surface staining, all samples were stained with antibodies at 4 °C for 30 min; for intracellular staining, cells were fixed and permeabilized with BD Cytofix/Cytoperm (Cat#: 554,714) then stained according to the manufacturer’s instructions. Analysis of stained cells was performed using a CytoFlex cytometer (Beckman Coulter) and CytExpert software.
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3

OP9-DL1 Co-culture for T-cell Development

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OP9 bone marrow stromal cells expressing the Notch ligand DL-1 (OP9-DL1) were kindly provided by Dr. Juan Carlos Zúñiga-Pflücker (University of Toronto). The OP9-DL1 cells were cultured and maintained in αMEM medium, supplemented with 10% FBS (Gibco), penicillin (100 µg/mL) and streptomycin (100 U/mL) (Invitrogen). For thymocytes co-cultures, the sorted DN2 or DN3 cells were plated onto confluent OP9-DL1 monolayers (70-80% confluent) with addition of 5 ng/ml recombinant murine interleukin-7 (PeproTech) and 5 ng/ml Flt3L (PeproTech). Cells were harvested at different time points, filtered through 40µm cell strainer, and stained with antibodies including ani-CD45 V450 (Tonbo, 75-0451-U100), anti-CD4 BV650 (Biolegend, 100546), anti-CD8a AF700 (Biolegend, 100730), anti-CD44 FITC (Biolegend, 103006), or anti-CD25 APC (Biolegend, 101910), followed by staining with Annexin V PE (Biolegend, 640908) and DAPI (4,6-diamidino-2-phenylindole, Invitrogen, D1306). EL4 cells (ATCC-TIB39) were cultured in DMEM with 10% FBS (Gibco), penicillin (100 µg/mL) and streptomycin (100 U/mL) (Invitrogen).
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