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35 protocols using pro prep lysis buffer

1

Quantifying α-Synuclein Clearance in Brain

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To analyze α-synuclein clearance in brain samples, the isolated brains were homogenized in PRO-PREP lysis buffer (iNtRON Biotechnology) containing a protease inhibitor (Thermo Fisher Scientific). The quantified cell lysates were separated by 10% SDS–polyacrylamide gel electrophoresis (PAGE) and transferred to nitrocellulose membranes (Bio-Rad). Membranes were incubated with primary antibodies against α-synuclein (1:1000; Santa Cruz Biotechnology, SC-12767), TH (1:2000; Millipore, AB152), pSer129-α-synuclein (1:5000; Abcam, ab51253), and β-actin (1:100,000; Sigma-Aldrich, A3854) followed by secondary antibodies. After visualization using SuperSignal West Dura (Thermo Fisher Scientific), immunoblots were quantified with ImageJ software. For ELISA, brain samples were collected after behavior tests. The collected samples were centrifuged for 20 min at 13,000 rpm at 4°C within 30 min after sample collection and analyzed using a commercially available α-synuclein ELISA kit (AnaSpec) following the manufacturer’s direction.
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2

Western Blot Protein Analysis in B16/F10 Cells and Mouse Skin

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B16/F10 cells were treated with KGO in the presence of α-MSH (10µM). Protein was extracted from the cells and the mouse skin of the UVB-irradiated mice according to the manufacturer’s instructions for the PRO-PREP® lysis buffer (iNtRON Biotechnology, Republic of Korea). The preceding steps were performed according to our previously reported study [30 (link)]. Briefly, the protein was separated on 10% SDS-PAGE and transferred onto PVDF membranes, followed by blocking with skim milk. Membranes were washed and incubated with a primary antibody at a dilution of 1:1000 overnight at 4 °C on a roller. The next day, the membranes were washed and incubated with a secondary antibody (1:3000 dilution) for 75 min before developing enhanced chemiluminescence in a gel developer (General Electrics, Boston, MA, USA).
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3

Modulation of LPS-induced Inflammatory Signaling

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The RAW264.7 macrophage cells were pretreated with methyl p-hydroxycinnamate for 1 hr and then stimulated with LPS. Cells were washed with PBS and lysed in PRO-PREP lysis buffer (iNtRON Biotechnology, Seongnam, Korea). Equal amounts of protein were separated on 10% SDS-polyacryl-amide gel. Proteins were transferred to Hypond PVDF membrane (Amersham Biosciences, Piscataway, NJ, USA) and blocked in 5% skim milk in TBST for 1 hr at room temperature. Specific antibodies against iNOS, COX-2, extracellular signal-regulated kinase (ERK), phosphorylated (p)-ERK, p38, p-p38, c-Jun N-terminal kinase Akt, p-Akt (1:1,000; Cell Signaling Technology), IκB-α (1:1,000; Santa Cruz Biotechnology Inc), and β-actin (1:2,500; Sigma) were diluted in 5% skim milk. After thoroughly washing with TBST, horseradish peroxidaseconjugated secondary antibodies were applied. The blots were developed by the enhanced chemiluminescence detection (Amersham Biosciences).
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4

Western Blot Analysis of Adipogenic Markers

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Total protein was extracted using PRO-PREP lysis buffer (iNtRON Biotechnology, Seongnam, Korea), which contains phosphatase inhibitors and a protease inhibitor cocktail. The lysates were centrifuged at 13,000 rpm for 15 min. The protein samples were separated by SDS-PAGE, transferred onto nitrocellulose membranes, blocked using 5% non-fat skim milk, and incubated overnight at 4 °C with antibodies against PPARγ, LPL, aP2, adiponectin (Abcam, Cambridge, UK), C/EBPα (Cell Signaling Technology Beverly, MA, USA), and β-actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA).
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5

Intestinal Protein Extraction and Analysis

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Total proteins were extracted from intestine using Pro-Prep™ lysis buffer (Intron Biotechnology, Seoul, Korea) and quantitated with Bradford assay reagent (Bio-Rad, Hercules, CA, USA) following the manufacturer’s protocol. Immunoblots were probed using the following antibodies: VEGF (1:1000, sc-1836, Santa Cruz Biotechnology, CA, USA), eNOS (1:1000, sc-634, Santa Cruz Biotechnology) and β-actin (1:3000, Sigma, MO, USA). The blots were incubated with these antibodies overnight at 4 °C and detected by the luminescence method using ECL solution (NEL104001EA, PerkinElmer, Waltham, MA, USA).
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6

Macrophage Signaling Pathway Analyses

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The RAW 264.7 macrophage cells were incubated with CT for 1 hr prior to LPS treatment. Cells were washed with PBS and lysed in PRO-PREP lysis buffer (iNtRON Biotechnology, Seongnam, Korea). Equal amounts of protein were separated on 10% SDS-polyacrylamide gel. Proteins were transferred to Hypond PVDF membrane (Amersham Biosciences, Piscataway, NJ, USA) and blocked in 5% skim milk in TBST for 1 hr at room temperature. Specific antibodies against inducible NO synthase (iNOS), COX-2, extracellular signal-regulated kinase (ERK), phosphorylated (p)-ERK, p38, p-p38, c-Jun N-terminal kinase (1:1,000; Cell signaling Technology), Akt, p-Akt (1:1,000; Cell signaling Technology), and β-actin (1:2,500; Sigma) were diluted in 5% skim milk. After thoroughly washing with TBST, horseradish peroxidase-conjugated secondary antibodies were applied. The blots were developed by the enhanced chemiluminescence detection (Amersham Biosciences).
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Immunoblotting Analysis of Inflammatory Markers

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The RAW264.7 macrophage cells were incubated with QG for 1 hr prior to LPS treatment. Cells were washed with PBS and lysed in PRO-PREP lysis buffer (iNtRON Biotechnology, Seongnam, Republic of Korea). Equal amounts of protein were separated on 10% SDS-polyacrylamide gel. Proteins were transferred to Hypond PVDF membrane (Amersham Biosciences, Piscataway, NJ, USA) and blocked in 5% skim milk in TBST for 1 hr at room temperature. Specific antibodies against inducible NO synthase (iNOS), COX-2, extracellular signal-regulated kinase (ERK), phosphorylated (p)-ERK, p38, p-p38 (1:1,000; Cell signaling Technology, Danvers, MA, USA), and β-actin (1:2,500; Sigma-Aldrich) were diluted in 5% skim milk. After thoroughly washing with TBST, horseradish peroxidase-conjugated secondary antibodies were applied. The blots were developed by the enhanced chemiluminescence detection (Amersham Biosciences).
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8

Fisetin Effects on Melanoma Cells

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B16F10 melanoma cells were cultured at a density of 1 × 104 cells/mL in 6 well plate overnight. Then, the cells were treated with the indicated concentrations of fisetin for 96 h and lysed with PRO-PREP lysis buffer (iNtRON Biotechnology). In a parallel experiment, the cells were washed with ice-cold PBS, and the cytosolic and nuclear protein was extracted using NE-PERTM Nuclear and Cytoplasmic Extraction Reagents (Pierce, Rockford, IL, USA). After cleaning lysates by centrifugation, protein was quantified by the Bio-Rad protein assay reagents (Bio-Rad, Hercules, CA, USA). An equal amount of protein was separated by SDS-polyacrylamide gel, transferred onto nitrocellulose membrane (Schleicher & Schuell, Keene, NH, USA) and then immunoblotted with the indicated antibodies. The expressional value was normalized to the intensity of β-actin or nucleolin.
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9

Protein Expression Analysis of B16F10 Cells

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B16F10 cells were seeded at 1 × 104 cell/mL in 6 well plates for 18 h at 37 °C and then pretreated with α-MSH (500 ng/mL) for 24 h prior to treatment with different concentrations of PS and PTS (0-400 μg/mL). The cells were lysed with PRO-PREP lysis buffer (iNtRON Biotechnology). The lysate was incubated for 20 min on ice and centrifuged at 16,000 rpm at 4 °C for 15 min. The supernatant was collected and protein concentrations were measured using Bio-Rad protein assay reagents (Bio-Rad, Hercules, CA, USA). Equal amount of protein was separated by electrophoresis on 10% SDS-polyacrylamide gel. The proteins were then transferred to a nitrocellulose membrane (Schleicher and Schuell, Keene, NH, USA) and immunoblotted with specific antibodies overnight at 4 °C. The membrane was washed three times and reincubated with peroxidase-labeled secondary antibody for 2 h. Bound antibodies were detected using an enhanced chemiluminescence plus kit (Thermo Scientific, Rockford, IL, USA). The images were visualized by a Chemi-Smart 2000 (Vilber Lourmat, Marne-la-Vallee, France). Images were captured using Chemi-Capt (Vilber Lourmat) and transported into Adobe Photoshop.
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10

Western Blot Analysis of Liver and eWAT

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Liver and eWAT tissues were homogenized and lysed in ice-cold PRO-PREP lysis buffer (iNtRON Biotechnology, Seongnam, Korea), containing phosphatase inhibitors and a protease inhibitor cocktail for 30 min at 4 °C. Then, the lysates were centrifuged at 12,000 rpm for 20 min at 4 °C and the supernatants of these tissue lysates were separated. The tissue protein quantification was measured using Bicinchoninic Acid Protein Assay Kit (Sigma-Aldrich, St. Louis, MO, USA). Each 20 μg of protein samples were separated by 10% sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes (GE Healthcare, Chicago, IL, USA). The membranes were blocked using 5% bovine serum albumin (BSA) in tris-buffered saline containing 0.1% Tween-20 (TBST) for 1 h at room temperature and incubated with primary antibodies against PPAR-α, PPAR-γ, C/EBP-α and β-actin overnight at 4 °C. Afterward, the membranes were washed two times with TBST, incubated with horseradish peroxidase (HRP)-conjugated secondary antibody for 1 h at room temperature and rewashed four times with TBST and one time with TBS. The proteins were visualized using an enhanced chemiluminescence (ECL) detection kit (BIO-RAD, Hercules, CA, USA) and a Davinch-In vivo & western imaging system (Davinch-K, Seoul, South Korea).
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