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Pcdna3

Manufactured by Genechem
Sourced in China

PcDNA3.1 is a plasmid vector used for DNA cloning and expression in mammalian cell lines. It contains a cytomegalovirus (CMV) promoter for high-level expression of the gene of interest and an ampicillin resistance gene for selection in bacteria.

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43 protocols using pcdna3

1

Regulation of PTEN by miR-195-5p in HBMVECs

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The miR-195-5p mimics, miR-195-5p inhibitor and corresponding negative controls (miR-NC and inhibitor NC) (GeneChem Corp., Shanghai, China) were transfected into HBMVECs using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific). To overexpress PTEN, the full length of PTEN was cloned into the backbone vector pcDNA3.1 (GeneChem Corp., Shanghai, China) to generate the overexpression plasmid pc-PTEN, and the empty vector was used as the negative control (pcDNA3.1). Then, 10 nM of pc-PTEN and pcDNA3.1 were transfected into HBMVECs using Lipofectamine 2000. After transfection for 48 h, the transfection efficiency was confirmed by qRT-PCR.
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2

Overexpression of GPX3 in PANC-1 Cells

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The coding sequences of GPX3 (accession no. NM_002084.5) were cloned into pcDNA3.1 (Shanghai Genechem Co., Ltd.) to construct GPX3-overexpressing vector (Oe-GPX3), and the empty pcDNA3.1 vector served as the negative control (Oe-NC). Upon achieving 60-70% confluency, PANC-1 cells were transfected with 5 µg/ml Oe-NC or Oe-GPX3 using Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) at 37˚C for 48 h, according to the manufacturer's protocol. At 48 h following transfection, the cell transfection efficiency was assessed by RT-qPCR and western blot analysis. For the rescue experiment, the GPX3-overexpressing PANC-1 cells were treated with 0.01 µM anisomycin (Shanghai Yuan Ye Bio-Technology Co., Ltd.), an activator of JNK, for another 24 h at 37˚C.
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3

Modulating SNHG5, miR-299 and BACH1 in Breast Cancer

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The knockdown of SNHG5 and miR-299 were performed using short hairpin RNA (shRNA) and miRNA inhibitor. The miRNA mimics and overexpression vector pcDNA3.1 were used for enhancing miR-299 and BACH1 expression. Sh-SNHG5 and sh-NC, miR-299 mimics, miR-299 inhibitor and mimics/inhibitor NC were synthesized by Genepharm (Shanghai, China). The full-length BACH1 cDNA was cloned into pcDNA3.1 (Genechem) to generate the pcDNA3.1-BACH1 vector. MDA-MA-231 and SK-BR-3 with 70% confluence were transfected with above plasmids by using Lipofectamine 3000 Reagent (Thermo Fisher Scientific, Waltham, USA).
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4

Knockdown of ACTA2-AS1 and BCL2L11 Using shRNA and siRNA

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The design and construction of shRNAs and si-RNA for ACTA2-AS1 and BCL2L11, the synthesis of pcDNA 3.1, miR-4428 mimics vector, and the construction of a lentiviral vector overexpressing ACTA2-AS1 and BCL2L11 were separately conducted by Genechem (Shanghai, China). The transfection was carried out using Lipofectamine 2000 reagent (Invitrogen, USA) according to the guideline of manufacturer. The sequences of genes were as followed:
si-ACTA2-AS1#1: 5′-UAGAUUAUUAUGUCUUCCCAG-3′
si-ACTA2-AS1#2: 5′-UAGUAAAGCAACAUUCUUGGA-3′
si-BCL2L11: 5′-UUAAAUAACGUGAACAUGCUG-3′
miR-4428 mimics: 5′-GUUCCUCUGCCCUUGUACCUCG-3′
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5

Targeting LINC01535 to Modulate miR-761 in Colon Cancer

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Short hairpin RNA (shRNA) targeting LINC01535 (sh-LINC01535), LINC01535 (overexpression vector), miR-761 mimics, miR-761 inhibitors and their corresponding negative control (NC) were purchased from GeneChem. All of the DNAs were inserted into pcDNA3.1 (Shanghai GeneChem Co., Ltd.). Finally, Lipofectamine 3000 (Thermo Fisher Scientific, Inc.) was utilized to transfect the oligonucleotides and constructs into the SW480 and HCT116 cells according to the manufacturer's protocol. After 36-48 h of transfection, the cells were ready for the following experiments.
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6

Regulation of Shh Promoter by E2F4

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Mouse E2F4 gene was cloned into the vector pCDNA3.1 (Genechem Co., Ltd., Shanghai, China). For transfection experiments, the chimeric genes of the Shh promoter plasmid were constructed in a GV148-basic vector (Genechem Co., Ltd., Shanghai, China) by ligating the 5′-flanking regions of the mouse Shh gene upstream of the luciferase gene. Mouse MEF cells were plated into 24-well cell culture plates 1 day before transfection. The transfections included 1 µg each of pCDNA3.1-basic and GV148-basic; E2F4 over-expressing pCDNA3.1 and GV148-basic; E2F4 over-expressing pCDNA3.1 and GV148-mutant; E2F4 over-expressing pCDNA3.1 and GV148-Shh promoter; E2F4 over-expressing pCDNA3.1 and GV148-mutant, E2F4 over-expressing pCDNA3.1 and GV148-Shh promoter. These were respectively co-transfected with Firefly luciferase (Fluc) Renilla luciferase (Rluc) into mouse MEF cells using X-treme GENE HP DNA Transfection Reagent (Cat#6366236001, Roche Diagnostics Corp., Switzerland) according to the manufacturer's protocol. Two days later, the promoter-driven luciferase activity was measured using the Dual-Luciferase® Reporter Assay system (Cat# E1910, Promega Corporation, Madison, WI, USA).
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7

Silencing LINC00662 and ITPR1 Overexpression

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Short hairpin RNA (shRNA) targeting LINC00662 (sh-LINC0062; 5′-GCUGCUGCCACUGUAAUAATT-3′) and nontargeting shRNA negative control (sh-NC) were purchased from Sangon Biotech Co., Ltd. (St. Louis, USA). MiRNA-16-5p mimics and negative control mimics (NC mimics) were synthesized at GenePharma (Shanghai, China). The pcDNA3.1 vector containing ITPR1 (pcDNA3.1/ITPR1) and the empty vector (pcDNA3.1) were obtained from Genechem (Shanghai, China). Cell transfection was performed using Lipofectamine 3000 (Thermo Fisher Scientific, Inc., USA). The transfection efficiency was examined by RT-qPCR 48 h later.
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8

Plasmid and siRNA Transfection of Trophoblast Cells

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The pcDNA3.1 vector was used to generate MIR503HG-overexpressing vector, and the empty vector, pcDNA3.1, and MIR503HG-overexpressing vector (pcDNA3.1-MIR503HG) were purchased from GeneChem (Shanghai, China). The siRNAs targeting MIR503HG (si-MIR503HG) and the scrambled negative controls (si-NC) were purchased from RiboBio (Guangzhou, China). For plasmid and siRNA transfection, trophoblast cells of a confluent cell monolayer were transiently transfected with plasmids (20 μg) or siRNAs (100 nM) using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instruction. At 24 h after transfection, cells were processed for further experimentation.
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9

Site-Directed Mutagenesis of ABCB1 in ES-2 and SKOV3 Cells

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The QuikChange II XL Site-directed Mutagenesis Kit (Agilent Technologies
Inc., Santa Clara, CA, USA) was used to perform site-directed
mutagenesis in the eukaryotic expression vector pcDNA 3.1 (GeneChem,
Shanghai, China) to construct two recombinant plasmids: wild-type
plasmid ABCB1 3435 C/wt and the mutant plasmid
ABCB1 3435 T/mut. The point mutation primer was
designed by Sangon Biotech (Shanghai, China). Sequencing and
validation of recombinant plasmids were performed by Sanger sequencing
(GATC Biotech AG, Konstanz, Germany).
ES-2 and SKOV3 cells (6–8 × 106 cells) were seeded in 25-cm
culture dishes. The two recombinant plasmids (10 μg each) were
transfected into both cell lines using Lipofectamine 2000 (Thermo
Fisher Scientific Inc., Rockford, IL, USA). At 48 hours after
transformation, 8 μg/mL puromycin was added to screen for stable
transformants.
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10

Silencing of TUG1 and EZH2 in TMZ-resistant Glioma

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The cDNA strands of TUG1 and EZH2 were synthesized and purified by Shanghai GeneChem Co., Ltd. and were cloned into the expression vector pCDNA3.1 (Shanghai GeneChem Co., Ltd.). Moreover, the short hairpin RNA (shRNA/sh) of TUG1 and EZH2 was obtained from Shanghai GeneChem Co., Ltd. and was used to prepare the plasmid vector for transfection using a DNA Midiprep kit (Thermo Fisher Scientific, Inc.). Next, A172/TMZ cells treated with IC50 TMZ (450 µM) were transfected with the plasmid construct [40 nM sh-TUG1/EZH2 or sh-negative control (NC), 2 µg pCDNA3.1-TUG1/EZH2 vector or pCDNA3.1-NC empty vector] using Lipofectamine® 2000 reagent (Thermo Fisher Scientific, Inc.), following the manufacturer's instructions at 37°C for 24 h. Further experimentation was performed after cells were incubated at 37°C for 48 h. The shRNA sequences are as follows: sh-TUG1, 5′-CAGAAGAATGGTACAAATCCAAG-3′; sh-EZH2, 5′-CTGATGAAGTAAAGAGTATGTTT-3′; and sh-NC, 5′-TTCTCCGAACGTGTCACGTTT-3′.
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