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74 protocols using su5402

1

Fgf Receptor Inhibitor SU5402 Treatment

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The 1 mM stock of the Fgf receptor inhibitor SU5402 (Sigma-Aldrich) was prepared in 100% DMSO and diluted to 2 µM with egg water. The 0.2% DMSO solution in egg water was used as a control. The larvae were treated with SU5402 from 24 to 38 hpf, then incubated in egg water with PTU until the time point of analyses.
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2

Endothelial Cell Culture and Inhibitor Treatments

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Kaempferol was 97% purity, as determined by high–performance liquid chromatography. A series of 50 mM stock solution of kaempferol, SU5402 (SML0443, Sigma-Aldrich) and PTK787 (S1101, Selleck) were prepared in DMSO, stored at −20 °C, and then diluted as needed concentrations in cell culture medium. Primary HUVECs (Sciencell, Carlsbad) were cultured in ECM (endothelial cell medium) with 5% (v/v) FBS, 1% (v/v) ECGS, and 1% penicillin–streptomycin (w/v) (Sciencell) at 37 °C under humidified atmosphere of 5% CO2. HEK-293 cells were cultured in DMEM (Dulbecco’s Modified Eagle Medium) with 10% (v/v) FBS. The 0.25% (w/v) trypsin with 1 mM EDTA was purchased from Invitrogen. VEGF165 was obtained from GIBCO. Matrigel was purchased from BD Biosciences.
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3

Derivation and Differentiation of FUS-Mutant iPSCs

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Derivation and maintenance conditions of human iPSCs carrying the P525L mutation in both FUS alleles (FUSP525L, male) and their isogenic FUS wild-type control (FUSWT, male) used in this study are described in Lenzi et al. (2015) (link). The MN differentiation protocol is detailed in De Santis et al. (2017) (link) and depicted in Figure S1A. In brief, cells were differentiated in N2B27 medium supplemented with 1 mM all-trans retinoic acid (Sigma-Aldrich) and 1 mM SAG (Merck Millipore) for 12 days in the presence of 10 mM SB431542">SB431542 and 100 nM LDN-193189 (both from Miltenyi Biotec) from day 0 to 6, and 5 mM DAPT and 4 mM SU-5402 (both from Sigma-Aldrich) from day 6 to 12. Cells were sorted at day 12-13 using a FACSAria III (BD Biosciences) and re-plated on poly-L-ornithine- and laminin-coated dishes (both from Sigma-Aldrich) in Neural Medium as described in De Santis et al. (2017) (link).
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4

Branchiostoma lanceolatum Embryo Development

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Ripe adults of Branchiostoma lanceolatum were collected at the Racou beach near Argelès-sur-Mer, France (latitude 42° 32′ 53′′ N, longitude 3° 03′ 27′′ E). Gametes were obtained by heat stimulation as previously described (Fuentes et al., 2007 (link)) and staging is as described previously (Bertrand et al., 2021 (link); Carvalho et al., 2021 (link)). Before pharmacological treatment, embryos were transferred to scraped Petri dishes filled with filtered seawater to prevent the eggs from sticking to the plastic. InSolution SU5402 (572631; Sigma-Aldrich) at 10-2 M was added to cultures of embryos to a final concentration of 25 µM at the blastula stage [B stage, 5 h post-fertilization (hpf) at 19°C] and embryos were raised in this medium until fixation. Control embryos were raised simultaneously with equivalent concentrations of DMSO in filtered seawater. Embryos were fixed in paraformaldehyde (PFA) 4% in MOPS buffer, dehydrated in 70% ethanol and then kept at −20°C. Staging is according to Carvalho et al. (2021) (link).
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5

Zebrafish Embryo Development Protocols

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All experiments were performed in accordance with UK Home Office regulations. Embryos were grown at 28.5°C as previously described.38 Lines used were AB (considered to be wildtype), masterblind (mbl),39 (link), Tg[elavl3:gfp],40 (link)
Tg[dusp6:d2eGFP],41 (link)
Tg[hsp70l:dkk1b-gfp],42 (link)
Tg[hsp70:ca-fgfr1],43 (link)
Tg[hsp70:gal4],44 (link)
Tg[dlx5a/6a:eGFP],45 (link)
Tg[UAS:HA-β-catenin],34 (link)
Tg[TOPdGFP].46 (link)
Heat shock induction was performed by moving embryos to 37°C for 2 hours at 16.5 hours post fertilization (hpf). Pharmacological treatments were performed by applying either SU5402 (Sigma), BIO (Invitrogen) or IWR-1 (Merck) diluted in embryo medium as previously described.34 (link) For all experimental conditions, a minimum of n = 10 embryos were used; for each individual experiment containing multiple conditions, embryos from the same clutch were used to minimise variation in developmental stage.
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6

Efficient Differentiation of hiPSCs into RPE Cells

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The protocol for differentiation of pluripotent hiPSCs into RPE was adapted from Buchholz et al., 2013 [14 (link)]. For differentiation, iPSCs were plated at 70–80% confluence on 9.6cm2 wells coated with 1X Matrigel (Corning) or Synthemax (3535XX1 Corning, Corning NY) or vitronectin (PeproTech) in basal neural induction medium (DMEM/F12+ 1X N2+ 1X B27 + 1X Non-essential amino acids, Thermo Fisher Scientific) supplemented for 2 days with Nicotinamide (10mM) (Sigma-Aldrich, St. Louis, MO), Noggin (50ng/ml) (PeproTech), Dkk-1 (10ng/ml) (R&D Systems, Minneapolis, MN.) and IGF-1 (10ng/ml) (R&D Systems) with a medium change on day 1. On days 3 and day 4, the Noggin concentration was reduced to 10ng/ml and bFGF was added at 5ng/ml (R&D Systems). The Nicotinamide, bFGF and Noggin were removed from the media on day 5 and on days 5 and 6 the basal medium was supplemented with only Dkk-1 (10ng/ml), IGF1 (10ng/ml) and Activin A (100ng/ml) (PeproTech). The DKK and IGF 1 were then removed and from day 7 to day 14 the basal medium was supplemented with Activin A (100ng/ml), and SU5402 (10μm) (Sigma-Aldrich). CHIR 99021(3μM) (TOCRIS, Bristol, UK.) was also added from day 8 to day14. (See Fig 1). All media supplements were removed for the expansion of iPSC-derived RPE.
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7

Pretreatment Conditions for Cell Signaling

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The following chemicals were purchased from Sigma and used at the indicated concentrations and pre-treatment periods: Genistein (100 μM) for 10min, Vanadate (1 mM) for 30 min, PP1 (10 μM) for 5 min, PP2 (25 μM) for 5 min, K252a (100 nM) for 5 min, SU5402 (40 μM) for 60 min. Herbimycin A (5 μM) for 15 min and Lavendustin A (50 μM) for 15 min were purchased from Tocris. Bisindolylmaleimide (200 nM) for 30 min, was purchased from EMD. Forskolin (100 μM) was purchased from Sigma and Sf9 cells were treated with it for 6 min. The antigen and purification strategy for the anti-PKC Apl II antibody was previously described [22 (link)].
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8

Pharmacological Manipulation of Zebrafish Development

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To prevent contractility for 2 hr, 100 hpf larvae were treated with 20 mM BDM (Higuchi and Takemori, 1989 (link)). To block Fgf and Hh signalling, zebrafish larvae were respectively exposed to SU5402 (15 µM) and Cyclopamine (5 and 10 µM) (Sigma-Aldrich) from 75 to 96 hpf. To increase retinoic acid signaling, dechorionated embryos were treated with 0.5 and 0.75 µM all-trans-retinoic acid (Sigma-Aldrich) from 74 to 96 hpf.
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9

Angiogenesis Inhibition Assay with SU5402

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The angiogenesis inhibition assay was performed with a ten-fold dilution series of the small molecule VEGFR2/FGFR inhibitor SU5402 (Sigma) in EGM2 and feeding it to hiPSC-ECs encapsulated in 3 wt% HyA hydrogel on day 1 to day 7. The samples were fixed with 4% PFA and stained for F-actin and DAPI, as described above. Fluorescent images were taken with a Prairie two photon/confocal microscope and analyzed with the ImageJ Angiogenesis Analyzer plugin. Nonlinear regression analysis of the dose-response curve to calculate IC50 was performed with Graphpad Prism 6 (data represents a fit to three experimental replicates).
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10

Recombinant FGF2 Isoform Preparation

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Recombinant rat HMW FGF2 (23 kDa) and LMW FGF2 (18 kDa) were produced in Escherichia coli bacteria and purified by affinity chromatography as described previously [17 (link),18 (link)]. Aβ1–42 (Peptide 2.0 Inc, Chantilly, VA, USA) was dissolved in DMSO and stocked at a concentration of 5 mM. SU5402 was purchased from Sigma, U0126 and LY294002 were from Cell Signaling (Danvers, MA, USA)
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