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Pdest orf v2

Manufactured by Addgene

The PDEST-ORF-V2 is a plasmid vector used for expression of proteins in mammalian cells. It contains a CMV promoter for high-level expression and a Gateway cloning system for easy insertion of ORF sequences.

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4 protocols using pdest orf v2

1

Cloning SORLA and APP Constructs

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The SORLA coding sequence was inserted into pDEST-ORF-V1 (#73637, Addgene) and pDEST-ORF-V2 (#73638, Addgene) vectors already containing the two Venus fragments (V1 and V2) obtaining the SORLA-V1 and SORLA-V2 constructs as previously described (33 (link)).
The SORLA expression constructs including untagged SORLA (from human cDNA), SORLA-GFP, and SORLA-FLAG were cloned into the pcDNA3.1 vector as previously described in detail (47 (link)). The APP-myc construct was generated from human cDNA and introduced in the pcDNA3.1 vector followed by insertion of a C-terminal myc-tag as explained previously (48 (link)). For the recombinant expression of SORLA VPS10p-domain, the coding sequence corresponding to 1 to 753 residues of human SORLA was fused with PA-tag coding sequence on its C terminus and inserted into pcDNA3.1 in a same way previously described (40 (link)).
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2

Generation of SORL1, ERBB2, and ERBB3 Expression Vectors

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SORL1 ORF was ordered from Origene in the pLenti-C-Myc-DDK plasmid (Origene, PS100064). The SORL1 ORF was digested using EcoRI and XhoI and ligated into the pLenti-C-GFP plasmid (Origene, PS100065) between EcoRI and XhoI restriction sites. pDEST-SorLA-v1 (Addgene, #154892) was generated by first PCR amplifying the SorLA coding sequence from the pLenti-SorLA-C-GFP vector using the primers 5’-GGTACTCGAGGCCACCatggcgacacggagcagcaggaggga-3’ and 5’-GGTCGAATTCggctatcaccatggggacgtcatctgaaaatccag-3’. PCR fragments were then subcloned into the pDEST-ORF-v1 (a kind gift from Darren Saunders, Addgene, #73637) [32 (link)] vector using the XhoI/EcoRI restriction enzymes. For the pDEST-ERBB2-v2 (Addgene, #154895), pDEST-ERBB3-v1 (Addgene, #154893) and pDEST-ERBB3-v2 (Addgene, #154894) vectors, LR reactions (LR clonase II, ThermoFisher Scientific) were performed using the pDEST-ORF-v1 and pDEST-ORF-v2 (Addgene, #73638) [32 (link)] destination vectors, and pDONR223-ERBB2 (a kind gift from William Hahn & David Root, Addgene, #23888) [62 (link)] and pDONR223-ERBB3 (Addgene, #23874) [62 (link)] shuttle vectors. pENTR2b-mVenus was LR subcloned into pEF.DEST51 (ThermoFisher Scientific, #12285011) to generate the expression plasmid, pEF.DEST51-mVenus. All vectors were verified by analytical digests and sequencing.
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3

Bimolecular Fluorescence Complementation for Receptor Interaction

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Bimolecular fluorescence complementation vectors were generated by gateway cloning with donor vectors containing Axl (pDONR223-Axl, Addgene plasmid 23945) or EGFR (pDONR223-EGFR, Addgene plasmid 23935).29 (link) These were cloned into pDEST-ORF-V1 (Addgene plasmid 73637) and pDEST-ORF-V2 (Addgene plasmid 73638), respectively. An expression vector encoding full length Venus fluorescent protein was also utilised as control. For confocal microscopy, HEK-293T cells expressing an H2B-mCherry nuclear marker were grown on glass coverslips within a six-well plate. These were transfected with 500 ng of each vector (or Venus control) using Polyplus Jetprime and incubated for 16 h. The coverslips were prepared for confocal microscopy by fixation with 1% paraformaldehyde for 5 min at room temperature. For high-content analysis, HEK-293T cells expressing an H2B-mCherry nuclear marker were grown on Greiner CELLSTAR 96-well plates in phenol red free media (Thermo Fisher Scientific). Each well was transfected with 20 ng of each vector (or Venus control) using Polyplus Jetprime and incubated for 16 h, in the presence of absence of gefitinib at the concentrations indicated. Single cell fluorescence intensity was measured using the ArrayScan XTI Live High Content Platform (Thermo Fisher Scientific).
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4

Cloning and BiFC Assay Protocol

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The vectors pDEST-ORF-V1 (Addgene #73637) and pDEST-ORF-V2 (Addgene #73638) were gifts from Darren Saunders(33 (link)). The pENTR223.1-SRMS (DNASU #HscD00350795) or pDONR223_MAP2K4 (a gift from Jesse Boehm & William Hahn & David Root, Addgene #82142) was cloned into pDEST-V1 or pDEST-V2 destination vectors. The BiFC assay was conducted as previous described(33 (link)). Comet assay was conducted as previously deprescribed(52 (link)).
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