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6 protocols using sf1670

1

Investigating SF1670 Effects on Cells

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SF1670 (B-0350, Echelon Biosciences), dissolved in dimethylsulfoxide (DMSO), was added to the culture medium 24 h after cell seeding. DMSO was used as the vehicle control. After 24 h of treatment, the cells were fixed for immunostaining and imaging.
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2

Mitochondrial Depolarization Assay with PTEN Inhibition

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EBV-transformed LCLs were seeded in wells of a 48-well plate at 750,000 cells/well in RPMI supplemented with 10% fetal calf serum and culture overnight. Depolarisation in the mitochondrial membrane potential in live cells was measured by the TMRE (tetramethylrhodamine, ethyl ester) assay (TMRE Mitochondrial Membrane Potential Assay Kit, Abcam). Cells were incubated with the TMRE dye (400 nM, 25 min), washed in PBS and stained with a cell viability dye to exclude dead cells from subsequent FACS analyses. Small molecule inhibition of PTEN was performed using increasing concentrations of the PTEN inhibitor, SF1670 (Echelon Biosciences Inc.). Cells were incubated for 20 hours in the presence of varying concentrations of the inhibitor prior to FACS detection of TMRE signal.
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3

Microglia and M-MØP Lipid Extraction

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Microglia and M‐MØP cells were prepared as described above. Cells were then exposed to anti‐FcγRII/III (2.4G2) antibody at 5 µg/ml or oligomers of Aβ1–42 (40 µM). Designated wells were inhibited by pre‐exposure for 2 h with 3‐a‐aminocholestane (20 µM, B‐0341), LY294002 (10 µM, B‐0294) or SF1670 (5 µM, B‐0350) (Echelon Biosciences). Cells were then exposed to ice‐cold 0.5 M TCA (trichloroacetic acid T6399, Sigma) for 5 min. Cells were then scraped off and spun (1,720 g, 7 min, 4°C). The cell pellet was washed twice with 5% TCA/ 1 mM EDTA, vortexed for 30 s and centrifuged (1,720 g, 5 min). The pellet is then vortexed twice with MeOH: CHCl3 (2:1) for 10 min at room temperature and centrifuged (1,720 g, 5 min). The pellet is then vortexed with MeOH: CHCl3:12 N HCl (80:40:1) for 25 min at room temperature and centrifuged at 1,720 g for 5 min. The pellet is then discarded, and CHCl3 and 0.1 N HCl are added. The tube is then centrifuged at 1,720 g for 5 min to separate organic and aqueous phases. Collect the organic phase into a new vial and dry in a vacuum dryer for 60 min.
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4

Antibody Staining and Signaling Pathways

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Antibodies against αL/LFA-1 (2D7), αM/Mac1/CD11b (M1/70), β2 (C17/16), and Rap1 were obtained from BD. Human anti–ICAM-1 (HA58) and β1 (eBioHmb1-1) were obtained from eBioscience. Phospho -Akt (Ser473), Akt, p-p38, p38, p-Erk, Erk, Rap1b, and anti–VE-cadherin (clone 55-7H1) were purchased from Cell Signaling Technology. Anti–SHP-1 antibody was obtained from Santa Cruz Biotechnology, Inc. Rhodamine-labeled phalloidin, IgG conjugated to Alexa Fluor 488, Alexa Fluor 594, Alexa 6Fluor 47, or Cy5 were obtained from Invitrogen. Anti-PIP3 antibody and PTEN inhibitor SF-1670 were from Echelon Biosciences. Antibody used for immunoblotting of CD11b was from Abcam, Src-inhibitor PP2, SHP-1/2 inhibitor NSC87877, and serine-protease inhibitor DFP were obtained from EMD Millipore. Akt-inhibitor MK2206 was obtained from Selleckchem. Rac inhibitor NSC23766 was a gift from Y. Zheng (Cincinnati Children’s Hospital Medical Center, Cincinnati, USA). Anti–β-actin antibody and PI3K inhibitor Ly294002 were obtained from Sigma-Aldrich.
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5

Serotonin and Peptide Dissolution

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Serotonin (5-HT; Acros Organics, ThermoFisher Scientific, Pittsburgh, PA) was dissolved in 1X Hank’s balanced salt solution (HBSS; Cellgro, Invitrogen). Peptides were dissolved in DMSO to a concentration of 10 mM stock solutions for functional assays. PTEN inhibitor SF1670 (Echelon Biosciences, Salt Lake City, UT) was dissolved in DMSO to a stock concentration of 5 mg/ml.
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6

Investigating Drug Resistance in CML Cells

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Human CML (K562) and DOX-resistant human CML (K562/DOX) cells were obtained from Pasteur Institute Cell Culture Collection (Tehran, Iran); DOX and LY294002 (a PI3K/Akt pathway inhibitor), PD098059 (a mitogen-activated protein kinase (MAPK) pathway inhibitor), GW9662 (a PPARγ antagonist), verapamil (a P-gp inhibitor), and MK571 (a MRP-1 inhibitor) were purchased from Cayman (USA). SF1670 (a PTEN inhibitor) was obtained from Echelon Biosciences Inc, (USA). Rhodamine123 (Rh123), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI), and RNase were purchased from Sigma (USA). Fetal bovine serum (FBS) and RPMI-1640 medium were purchased from Gibco (USA). Antibodies for P-gp, MRP-1, PTEN, and β-actin were obtained from Abcam (Cambridge, UK).
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