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Ficoll hypaque

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Ficoll-Hypaque is a density gradient medium used for the separation of cells, such as lymphocytes, from whole blood or other biological samples. It enables the isolation of specific cell types based on their density differences. The product provides a consistent and reliable method for cell separation, which is a crucial step in various applications, including immunology, cell biology, and diagnostics.

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386 protocols using ficoll hypaque

1

Isolation of Canine Peripheral Blood Mononuclear Cells

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Blood samples (10 ml each) from the 17 dogs (control group: n = 6; Leishmune® group: n = 5; LdCen−/− group: n = 6) were collected in heparinized tubes intended for obtaining peripheral blood mononuclear cells (PBMC), as previously described [13 (link)]. Briefly, the whole blood volume collected was placed in a mixture of Ficoll-Hypaque (Sigma Chemical Co.; density: 1.119 g/ml) and Ficoll-Hypaque (Sigma Chemical Co.; density: 1.077 g/ml) at a 1:3 ratio (Ficoll/blood) in sterile polystyrene conical bottom tubes (Falcon, Corning, USA). All samples were centrifuged at 700 × g for 80 min at 22 °C. The PBMC ring was collected at the Ficoll-Hypaque interface and transferred to another tube with 40 ml of Falcon sterile 1× PBS containing 10 % FBS. This tube was centrifuged twice at 400 × g for 10 min at 4 °C. After the supernatant was discarded, the cells were resuspended in 1 ml of cell culture medium RPMI 1640. Cells were counted in a Neubauer hemocytometer chamber to determine the numbers of monocytes or lymphocytes per milliliter.
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2

Blood Cell Separation Protocol

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Peripheral blood (2 mL) was collected with a 4:1 ratio (blood/EDTA) for obtaining different blood populations. The whole blood volume collected was placed in a mixture of Ficoll–Hypaque (Sigma Chemical Co., USA, density: 1.119 g/mL) and Ficoll–Hypaque (Sigma Chemical Co., USA, density: 1.077 g/mL) at a 1:3 ratio (Ficoll/blood) in sterile polystyrene conical bottom tubes (Falcon™, Corning®, USA). All samples were centrifuged at 400 g for 40 min at 22°C. The ring of lymphocytes and thrombocytes was collected and acquired in flow cytometer in order to confirm their location. The same process was performed for the erythrocytes and granulocytes rich portion [41 (link)].
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3

Quantitative DNA Methylation Analysis by MethyQESD

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According to a previously described standard protocol,[23 ] the PBMCs were obtained by density gradient centrifugation over Ficoll-Hypaque (Ficoll-Hypaque, Sigma) from the peripheral blood samples of all individuals. DNA was extracted from the PBMCs using a Prime Prep Genomic DNA Isolation Kit (GeNetBio, Korea), and its quantity and quality were evaluated by gel electrophoresis and using a NanoDrop spectrophotometer, respectively.
Quantitative methylation analysis was accomplished using the MethyQESD technique.[24 (link)] This method is based on a combination of methylation-sensitive restriction enzymes and a real-time polymerase chain reaction (RT-PCR). According to the protocol, two different batches were considered, one a methylation-specific quantification digestion (MQD) with Hin6I and the other a methylation-sensitive endonuclease calibrator digestion (CalD) with the methylation-independent endonucleases, namely, XBaI and DraI. The sequence of primers was as follows: forward: 5’-TACCGCGCGTGGAGGAGACA-3’; reverse: 5’- GTGGGCAGGTACCGCAGCC-3’. The enzyme digestion and RT-PCR protocol were described in detail by Duppel et al.[25 (link)]
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4

Murine and Human MDSC Isolation

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Mouse bone marrow cells were harvested from WT or β2-AR−/− mice by flushing femurs with sterile PBS. Human PBMCs were isolated from healthy volunteer donors by venipuncture and subsequent differential density gradient separation (Ficoll Hypaque, MilliporeSigma) was carried out. Bone marrow cells were then cultured in RPMI supplemented 10% FBS, 1% l-glutamine, 1% penicillin/streptomycin, IL-6 (20 ng/mL, Biolegend), and GM-CSF (20 ng/mL, Biolegend) for 7 days, in the presence or absence of ISO (10 μM). Media, cytokine and ISO were refreshed twice during generation, and adherent cells were removed using the Detachin Cell Detachment Solution (Genlantis, catalog T100100). Bone marrow derived murine MDSCs were characterized using CD11b, Ly6G, Ly6C and Gr-1 markers. Gr-1 positive cells were used for in vitro experiments. Human MDSC populations were characterized by flow cytometry using the markers CD14 and CD33, and CD33+ cells were isolated from each culture using EasySep HLA Chimerism CD33 Whole Blood Positive Selection Kit (STEMCELL Technologies) per manufacturer’s instructions. The purity of isolated cell populations was determined to be greater than 90% by flow cytometry.
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5

Isolation and Enrichment of Tumor-Infiltrating Lymphocytes

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Mouse tumors were dissected and digested with collagenase IV (250 unit/ml, Worthington Biochemical Cooperation) and DNase I (100 μg/ml, Roche Diagnostics GmbH) in HBSS using a gentleMACS dissociator (Miltenyi Biotec). TILs were enriched by Ficoll–Hypaque (MilliporeSigma) gradient centrifugation and single cells were recovered. Finally, the cell viability was determined by trypan blue exclusion.
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6

Isolation of Human and Woodchuck PBMCs

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Heparinized peripheral blood was collected by venous puncture from human healthy donors and healthy woodchucks. Peripheral blood was collected in accordance with protocols approved by the Institutional Review Board (IRB) (I 36404, 7 September 2017 of approval) and Institute Animal Care and Use Committee (IACUC) (1064W, 11 July 2015 of approval) at Roswell Park Comprehensive Cancer Center. Peripheral blood mononuclear cells (PBMCs) were isolated by density gradient centrifugation using Ficoll-Hypaque (MilliporeSigma, St. Louis, MO, USA).
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7

Isolation of Human Peripheral Blood Mononuclear Cells

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Blood samples were taken by venipuncture into sterile, EDTA tubes. PBMCs were isolated by density gradient centrifugation on Ficoll-Hypaque (Millipore Sigma) at 2000 rpm at room temperature for 30 min. Interphase cells were removed and washed twice in PBS. The cells were counted with a hemocytometer using Türk’s solution (Millipore Sigma) and resuspended in FACS buffer (0.1% sodium azide, 1% human AB serum, 1% FBS in PBS).
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8

Murine and Human MDSC Isolation

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Mouse bone marrow cells were harvested from WT or β2-AR−/− mice by flushing femurs with sterile PBS. Human PBMCs were isolated from healthy volunteer donors by venipuncture and subsequent differential density gradient separation (Ficoll Hypaque, MilliporeSigma) was carried out. Bone marrow cells were then cultured in RPMI supplemented 10% FBS, 1% l-glutamine, 1% penicillin/streptomycin, IL-6 (20 ng/mL, Biolegend), and GM-CSF (20 ng/mL, Biolegend) for 7 days, in the presence or absence of ISO (10 μM). Media, cytokine and ISO were refreshed twice during generation, and adherent cells were removed using the Detachin Cell Detachment Solution (Genlantis, catalog T100100). Bone marrow derived murine MDSCs were characterized using CD11b, Ly6G, Ly6C and Gr-1 markers. Gr-1 positive cells were used for in vitro experiments. Human MDSC populations were characterized by flow cytometry using the markers CD14 and CD33, and CD33+ cells were isolated from each culture using EasySep HLA Chimerism CD33 Whole Blood Positive Selection Kit (STEMCELL Technologies) per manufacturer’s instructions. The purity of isolated cell populations was determined to be greater than 90% by flow cytometry.
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9

Isolation and Differentiation of Eosinophil and Mast Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated through Ficoll-Hypaque (Sigma) density centrifugation from blood obtained from healthy volunteers. CD34+ cells were enriched from PBMCs using positive magnetic affinity column purification (Miltenyi Biotec) and eosinophil progenitors were derived using the technique of Hudson et al. (22 (link)) by culturing purified CD34+ cells in complete medium (RPMI1640 and 10% FBS) supplemented with stem cell factor (SCF; 25 ng/ml; BD Biosciences), thymopoietin (TPO; 25 ng/ml; R&D System, Minneapolis, MN), Fms-like tyrosine kinase 3 (Flt3) ligand (25 ng/ml; BD Biosciences), IL-3 (25 ng/ml; BD Biosciences) and IL-5 (25 ng/ml; BD Biosciences) with or without IFN-γ (20 ng/ml; BD Bioscience) for 3 days and then cultured for an additional 3 weeks with just IL-3 and IL-5 (±IFN-γ). Cells were washed and fresh media and cytokines were applied weekly. Maturation was accessed as previously described (17 (link)) and cells were activated as described above.
Mast Cells. For studies involving mast cells, CD34+ cells isolated as described were cultured for 8 weeks with stem cell factor and IL-6 and, for the first week only, with IL-3 according to the methodology of Kirshenbaum et al (23 (link), 24 (link)).
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10

Evaluating AML Progenitor Colony Formation

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These assays were performed as described in previous studies [17 (link), 43 (link)]. Briefly, peripheral blood or bone marrow samples were obtained from patients with AML after obtaining informed consent approved by the Institutional Review Board of Northwestern University. Mononuclear cells were isolated by Ficoll-Hypaque (Sigma Aldrich) sedimentation. To assess the effects of drugs on leukemic progenitor (CFU-L) colony formation, cells were plated in methylcellulose (MethoCult™ H4534 Classic without EPO, Stem Cell Technologies), in the presence of BYL-719 or OSI-027 alone or in combination, at a final concentration of 1μM. For cell line-derived CFU-L colony formation, U937 and Kasumi 1 cells were incubated in methylcellulose with BYL-719 or OSI-027 alone or in combination, at final concentrations of 1μM and 5μM, respectively. MM6 cells were incubated in methylcellulose with BYL-719 or OSI-027 alone or in combination, at a final concentration of 1μM.
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