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45 protocols using ab76020

1

Intracellular Trafficking Protein Analysis

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The following primary antibodies were used: rabbit polyclonal anti-VMP1 (ab240887; Abcam; UK); mouse monoclonal anti-flag (AE005; Abclonal; China); rabbit polyclonal anti-Na + -K + -ATPase (ab76020; Abcam); rabbit polyclonal anti-EEA1 (ab2900; Abcam); rabbit monoclonal anti-Rab7 (ab137029; Abcam); rabbit polyclonal anti-Rab11 (#71–5300; invitrogen; USA); mouse monoclonal anti-CD63 (ab217345; Abcam; UK); rabbit polyclonal anti-Alix (12422–1-AP; Proteintech; China); rabbit polyclonal anti-Tsg101 (ab83; Abcam); mouse monoclonal anti-LAMP1 (sc-19992; Santa cruz; USA); mouse monoclonal anti-CHMP4 (sc-514869; Santa cruz; USA). 2-BP (#21604) was purchased from Sigma Aldrich. Baf A1(#54645) was purchased from Cell Signaling Technology; When indicated, the medium contained 50 μM 2-BP or 20 nM Baf A1.
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2

Western Blot Analysis of Cellular Proteins

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Cell lysates were centrifuged (15 min, 16,000× g, 4 °C), and protein concentrations were determined using the Lowry’s methodology. Samples were subjected to SDS/PAGE and transferred onto membranes which were then incubated with anti-GRP78 antibody (NBP1-06274, Novus Biologicals), anti-ATF6 antibody (MAB6762 clone 1-7, Abnova, Taipei, Taiwan), anti-SREBP2 (#7076, Cell Signaling, Limoges, France), anti-aldolase antibody (ab169544, Abcam, Paris, France), anti-Histone H1 antibody (sc-8030 AE-4, Santa Cruz Biotechnology, Heidelberg, Germany), anti-CFTR antibody (596, US Cystic Fibrosis Foundation), anti-CFTR antibody (24-1 clone, Novus Biologicals), anti-NaK-ATPase antibody (ab76020, Abcam), and anti-Actin-HRP (sc-47774, Santa Cruz Biotechnology). Densitometric measurements were performed using Image Studio Lite software (Version 5.2) and signals were normalized with the housekeeping genes.
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3

Protein Extraction and Western Blot Analysis

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The harvested cells were washed with PBS, suspended in RIPA Buffer (Nacalai tesque, catalog no. 16488-34) containing Protease Inhibitor Cocktail (Nacalai tesque, catalog no. 25955-24), incubated on ice for 15 minutes, and centrifuged (12,000 × g, 10 minutes, 4°C). The supernatant was collected as a cell lysate. Next, we added Sample Buffer Solution (Nacalai tesque, catalog no. 09499-14) containing 100 mmol/L Dithiothreitol (DTT) prior to boiling, and ran the samples on 4%–20% gradient gels (TEFCO, catalog no. 01-022-10) for SDS-PAGE, and performed transfer on Immobilon-P PVDF membranes (Millipore, catalog no. IPVH00010). Blocking with 5% skim milk in TBS-T for 1 hour at room temperature. The membranes were incubated with 0.5 μg/mL anti-CAPRIN-1 antibodies, 0.3 μg/mL anti-GAPDH antibody (Abcam, catalog no. ab9485, RRID:AB_307275), 0.1 μg/mL anti-Sodium Potassium ATPase antibody (Abcam, catalog no. ab76020, RRID:AB_1310695) in 5% skim milk/TBS-T for 1 hour at room temperature, after washing the membrane four times with TBS-T, incubated with the second antibody, that is, HRP anti-rabbit IgG, HRP anti-mouse IgG, and HRP anti-human IgG for 1 hour at room temperature. Signals were detected using Western Lightning Plus-ECL (PerkinElmer, catalog no. NEL104001EA) on a FUSION SOLO.6S.EDGE (Vilber Lourmat) chemiluminescence imaging system.
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4

Immunolabeling of Brain Sections

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Paraffin-embedded brain sections were dewaxed and antigen retrieval was performed as described previously (56 (link)). The following primary antibodies were used for immunolabeling: a chicken polyclonal anti-MAP2 antibody (ab5392; Abcam), a rabbit monoclonal anti-Na,K-ATPase α subunit antibody (ab76020, Abcam), and a mouse monoclonal anti-Na,K-ATPase α1 subunit antibody (a6F; DSHB). Confocal microscopy was performed with Zeiss LSM 780 and Leica TCS SP8 microscopes. For further details, see Supporting information (Text S3).
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5

Cycloheximide Chase Assay for Na/K-ATPase

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For cycloheximide (CHX) chase experiments, tsA-201 cells (2.2e + 06 cells per 100 mm dish) were seeded and transfected as described. Cells were treated two days after transfection with 20 μg/ml CHX (C1988, Merck) for 2, 4 and 8 h. Immunoblotting was carried out as described above with the following changes: 15 µg of extracted membrane proteins was loaded and detection of the Na/K-ATPase (1:100 000; #ab76020, Abcam) was preferred instead of alpha-Tubulin. Due to space restrictions, WT samples of one transfection were used on two separate plots for comparison with RG and RL protein levels. Thus, the mean of the resulting WT signal intensities after normalization to loading control over these two blots served as one value for WT samples.
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6

Immunostaining and Histochemical Analysis of Mouse Corneas

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Corneas of mice were dissected under a binocular microscope and fixed with 4% PFA (P0099; Beyotime) for 1 hour. Then, mouse corneas were permeabilized with 0.1% Triton X-100 (P0096; Beyotime) in PBS for 5 minutes and blocked in 3% bovine serum albumin (BSA) in PBS for 30 minutes. Subsequently, anti-zonula occludens-1 (ZO-1) antibody (40-2200; Invitrogen) and anti-sodium potassium ATPase (Na+-K+-ATPase) antibody (Ab76020; Abcam) in 1% BSA-PBS was used to incubate the corneal cups at 4°C overnight, respectively. After that, secondary anti-rabbit fluorescein isothiocyanate (FITC; ab150077; Abcam) was applied to conduct the secondary antibody incubation. Corneal cups were flattened by four radial cuts and mounted by DAPI mounting medium (0100-20; Southern Biotech). The graphs of ZO-1 and Na+-K+-ATPase staining were captured using the laser confocal scanning microscope (Leica SP8; Wetzlar, Germany).
For periodic acid–Schiff (PAS) staining, paraffin tissue slices of mouse corneas were dewaxed and oxidized by 0.5% periodate acid solution. Then, corneal slices were stained in PAS reagent in the dark for 30 minutes. Subsequently, nuclear dying using hematoxylin, dehydration, and slice seal were performed. The images of PAS staining were obtained using an optical microscope.
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7

Protein Fractionation and Western Blot

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Cytoplasm and membrane fractions were mixed with 4x Laemmli and β-mercaptoethanol. Equal volumes of fractions were directly loaded in a 4-12% pre-cast gradient gel (BioRad, USA) and separated by SDS-Page. Proteins were transferred to a nitrocellulose membrane (BioRad, USA), blocked with 5% non-fat dietary milk (NFDM, Carl Roth, Germany), and washed and incubated with the primary antibodies were either diluted in 5% NFDM or 5% bovine serum albumin (BSA, Serva, USA) overnight at 4°C: hIL-1α (1:500, sc-271618, clone G10, Santa Cruz, USA), mIL-1α (1:1,000, AF-400-SP, R&D, USA), GAPDH (1:5,000, sc-47724, clone 0411, Santa Cruz, USA), NaK ATPase (1:10,000, ab76020, Abcam, United Kingdom). The membrane was incubated with the secondary antibody coupled with horse radish peroxidase diluted in 5% NFDM for 1h on the following day. Classico Western HRP Substrate (Millipore) or SuperSigna West Femto (Thermo Fisher Scientific, USA) were used for development on iBright 1500 (Thermo Fisher Scientific, USA).
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8

Quantifying Cell Size in Xenograft Tumors

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All procedures were approved by the Institutional Animal Care and Usage Committee at Vanderbilt University Medical Center. MDA-MB-231 (n = 6) and two MCF7 (n = 4) subcutaneous xenografts in the hind limbs were developed in female Athymic nude mice (Harlan Laboratories, Inc., Indianapolis, IN). Animals were scanned on a Varian/Agilent 4.7T MRI when tumor sizes reached 200 – 300 mm3 and then euthanized for histology using H&E staining for cellularity and Na+/K+-ATPase (ab76020, Abcam) staining for cell size. Histology images were analyzed using CellProfiler™ to obtain quantitative information on cell sizes.
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9

Membrane Protein Enrichment and Analysis

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Membrane protein-enriched samples from cultured cells were used for loading, as the iodide transporter normally functions within the cell membrane. After a PBS wash, the cells were harvested using an elution buffer (20 mmol/L HEPES, pH 7.6, 20 mmol/L NaCl, 0.5 mmol/L EDTA, 10% glycerol) and scraped into a chilled microtube. The cells were sonicated and centrifuged for 30 min at 10,000g at 4 °C, and the pellet was resuspended using a membrane-solubilizing buffer (elution buffer with 1% triton X-100) and incubated on ice for 30 min. After centrifugation, the supernatant was used as the membrane protein-enriched sample. The sample were separated by 8% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to poly vinylidene fluoride membrane. These membranes were blocked for 30 min at room temperature with 0.5% skim milk in PBS containing 0.1% (v/v) Tween 20 (PBS-T) and then incubated with appropriately diluted rabbit anti-SLC26A7 (1:1000; BMP084, MBL), rabbit anti-SLC26A4 (1:500; ab98091, Abcam), mouse anti- SLC5A5 (1:1000; ab17795, Abcam), or mouse anti-FLAG antibodies (1:1000; F1840, Sigma-Aldrich) as primary antibodies. A rabbit anti-sodium potassium ATPase antibody (1:10000; ab76020, Abcam) and a mouse anti-β-actin (1:10000; A5441; Sigma-Aldrich) antibody were used as internal controls.
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10

Immunolabeling of Astrocytic Markers

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The primary antibodies against Kir4.1 (APC-035) and AQP4 (AQP-004) were from Alomone Lab (Jerusalem, Israel). Dystrophin (ab7164), GFAP (ab53554) and Na+-K+-ATPase (ab76020) antibodies were from Abcam (Cambridge, UK). Glutamine synthetase (GS, NBP2–43646) and VEGF-A (NB100–664) antibodies were from Novus Biological (Littleton, USA). Potassium indicator (P1267MP) and sodium indicator (S1263) were from Thermo Fisher Scientific (Shanghai, China).
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