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14 protocols using anti cd138

1

Plasma Cell Immunophenotyping Assay

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Cells from the plasma cell assay were collected in a 96-well plate and washed with PBS followed by staining with LIVE/DEAD Fixable Near-IR Dead Cell Stain kit (Invitrogen). Reagent was reconstituted as per manufacturer’s instructions, diluted 1:1000 in PBS, and cells were stained in 100 μL on ice for 20 minutes. The cells were then washed with FACS buffer, PBS (Corning), 2 mM EDTA and 2% heat inactivated fetal bovine serum (Omega Scientific). The cells were then stained with 50 μL antibody cocktail consisting of anti-CD19 (BioLegend), anti-CD45R (BD Pharmingen), and anti-CD138 (BioLegend) in FACS buffer on ice for 15 minutes. Cells were washed twice with 200 μL FACS buffer. XBPIs staining was performed utilizing a Foxp3/transcription factor buffer set (eBioscience) per the manufacturer’s instructions in conjunction with Alexa Fluor 647 anti-XBPIs (BD Biosciences). Cells were resuspended in FACS buffer and combined with an equal volume of 4% paraformaldehyde with 5000 Countbright Absolute Counting Beads (Thermofisher). Stained cells were analyzed on a Fortessa (Becton Dickinson). Division index and data analyses were performed using FlowJo (v10) software (Treestar Inc.).
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2

Comprehensive Flow Cytometry Analysis of Murine Splenocytes

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Flow cytometry analysis of spleen cell suspensions was performed using the following fluorescent-labeled anti–mouse antibodies: APC-conjugated anti-B220 (BD Biosciences #553092), anti-CD138 (BD Biosciences #558626) and anti-IgM (eBioscience #17–5790-82); PE-conjugated anti-IgD (BD Biosciences #558597), anti-CD23 (eBioscience #5010271) and anti-CD95 (BD Biosciences #554258); PECy7-conjugated anti-CD21 (BioLegend #123420), anti-CD95 (BD Biosciences #557653), anti-GL7 (BD Biosciences # 561530) and anti-CD86 (BD Biosciences #560582); PEVio770-conjugated anti-B220 (Miltenyi Biotec #130–102-308); FITC-conjugated anti-CXCR4 (BD Biosciences #551967) and anti-IgG1 (ebioscience #11–4011-85); Brilliant Violet 421-conjugated anti-CD138 (BioLegend #142507); PerCP-Cy5.5-conjugated anti-GL7 (BioLegend #144610), anti-CD138 (BioLegend #142510) and anti-IgM (BD Biosciences #550881), APC-Cy7-conjugated anti-CD19 (ebioscience #47–0193-82), AlexaFluor647-conjugated anti-BLIMP1 (BD Biosciences #563643). Sytox blue (ThermoFisher Scientific) or DAPI was used for the exclusion of dead cells. Data was acquired on a BD FACSCanto II (BD Biosciences) and analyzed using FlowJo v10.1 software (TreeStar).
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3

Immunofluorescent Staining of Mouse Spleen Sections

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7 mm spleen sections were prepared from OCT-frozen tissues, fixed in acetone for 10 min, and stored at −80°C. The slides were thawed and re-hydrated using PBS and blocked using PBS+1% BSA and 2.4G2 for 10 minutes. The slides were then stained with relevant Abs as described in the figure legends in a dark humid chamber for 30 minutes. The Abs were either purified in our lab or purchased and are as follows. Anti-B220 (Biolegend RA3-6B2), anti-CD19 (BD ID3), anti-IgM (home-made B7-6), for B cells, anti-CD4 (Biolegend GK1.5), anti-TCR-β (Biolegend H57-597) for T cells, anti-CD138 (Biolegend 281-2) for PB, anti-CD169 (Biolegend 3D6.112) for metalophillic macrophages, anti-CD11c (ebioscience N418) and anti-T-bet (Biolegend 4B10). The slides were washed thrice using PBS and the same steps were followed for secondary Ab. For intracellular staining, the sections were permeabilized using 0.3% Triton X-100 reagent before staining. Sections were mounted using ProLong Anti-fade Gold (Life Technologies) and imaged using Olympus Fluorescence Microscope IX3-BSW and acquired using Cell Sens Dimension software.
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4

Multiparametric Flow Cytometry of B Cells

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For FC staining, non-specific binding was blocked using anti-FcR clone 2.4G2 and dead cells were excluded using cell viability dye (Tonbo Biosciences). The Abs were either purified in our lab or purchased and are as follows. Anti-B220 (Biolegend, RA3-6B2), anti-CD19 (BD ID3), anti-IgM (homemade, B7-6), anti-CD45 (home-made 30-F11), anti-CD21 (homemade, 7G6), anti-CD23 (ebioscience, B3B4) for B cells, anti-CD4 (Biolegend, GK1.5), anti-TCR-β (Biolegend H57-597) for T cells, anti-CD138 (Biolegend, 281-2) and anti-CD44 (Biolegend, IM7) for B cell blasts and PB, anti-CD73 (Biolegend, TY-11.8), anti-CD80 (ebioscience, 16-1oA1), anti-PD-L2 (ebioscience, TY25) for MBC, PNA (vector labs), anti-CD95 (BD, Jo2) for GCBC, anti-CD169 (Biolegend, 3D6.112) for metalophillic macrophages, anti-CD11b (Biolegend M1-70), anti-CD11c (ebioscience, N418), anti-CD69 (ebioscience, H1.2F3), anti-AID (ebioscience, mAID-2) and anti-T-bet (Biolegend, 4B10). The click IT Plus Edu kit was purchased from Invitrogen and the staining was done according to the recommended protocol. The cells were analyzed on LSR II or Fortessa instruments (BD) and the data were analyzed on FlowJo software.
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5

Plasma Cell Immunophenotyping Assay

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Cells from the plasma cell assay were collected in a 96-well plate and washed with PBS followed by staining with LIVE/DEAD Fixable Near-IR Dead Cell Stain kit (Invitrogen). Reagent was reconstituted as per manufacturer’s instructions, diluted 1:1000 in PBS, and cells were stained in 100 μL on ice for 20 minutes. The cells were then washed with FACS buffer, PBS (Corning), 2 mM EDTA and 2% heat inactivated fetal bovine serum (Omega Scientific). The cells were then stained with 50 μL antibody cocktail consisting of anti-CD19 (BioLegend), anti-CD45R (BD Pharmingen), and anti-CD138 (BioLegend) in FACS buffer on ice for 15 minutes. Cells were washed twice with 200 μL FACS buffer. XBPIs staining was performed utilizing a Foxp3/transcription factor buffer set (eBioscience) per the manufacturer’s instructions in conjunction with Alexa Fluor 647 anti-XBPIs (BD Biosciences). Cells were resuspended in FACS buffer and combined with an equal volume of 4% paraformaldehyde with 5000 Countbright Absolute Counting Beads (Thermofisher). Stained cells were analyzed on a Fortessa (Becton Dickinson). Division index and data analyses were performed using FlowJo (v10) software (Treestar Inc.).
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6

Comprehensive Immune Cell Profiling

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Anti-CD4, anti-CD8, anti-CD11c, anti-CD11b, anti-MHC-II, anti-CD80, anti-CD86, anti-CD335, anti-CD3, anti-IFN-γ (all BD Biosciences, Heidelberg, Germany), anti-CD62L, anti-TNF-α, anti-Foxp3 (all eBioscience, Frankfurt, Germany), anti-CD160, anti-CD138, and anti-IL-10 (Biolegend, London, UK) were used as fluorescein isothiocyanate, pacific blue, phycoerythrin (PE), BD Horizon V450, allophycocyanin, AlexaFlour647, PE-cyanin 7, or peridinin-chlorophyll protein conjugates. Dead cells were identified by staining with the fixable viability dye eFlour 780 (eBioscience, Frankfurt, Germany). Intracelluar staining for Foxp3 was performed with the Foxp3 staining kit (eBioscience, Frankfurt, Germany) according to the manufacturer’s recommendations. Cytokine production from freshly isolated splenocytes was measured by stimulating cells with 10 ng/ml phorbol 12-myristate 13-acetate (PMA, Sigma-Aldrich, München, Germany) and 100 µg/ml ionomycin (Sigma-Aldrich, München, Germany) for 4 or 6 h (IL-10), respectively, in the presence of 5 µg/ml Brefeldin A (for IFN-γ, TNF-α staining) and 5 µg/ml Monensin (for IL-10 staining), treating with 2% paraformaldehyde and 0.1% NP40, and staining with the respective antibody cocktail. Flow cytometric expression analyses were performed with an LSR II instrument using DIVA software (BD Biosciences, Heidelberg, Germany).
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7

Comprehensive Immune Cell Profiling

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The cells were resuspended in ice-cold PBS containing 1% FBS and were stained with anti-CD3, anti-CD4, anti-CD8, anti-B220, anti-CD38, anti-CD138, anti-PD-1, anti-CXCR5, anti-CD62L, anti-OX40, anti-IgD, anti-CD95, anti-GL7, anti-CD11c, anti-CD80, anti-CD86, anti-MHC II, anti-CD40, anti-CD69, anti-CD11b, anti-Gr-1, and anti-F4/80 antibodies (Biolegend). Intracellular staining of IFN-γ, TNF-α, IL-17a, Helios, and Foxp3 was performed after 4 h of stimulation with PMA and ionomycin following a standard protocol (BD Biosciences). The results were obtained on a BD FACS Fortessa flow cytometer and were analyzed using FlowJo software.
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8

Apoptosis Assay for Plasma Cells

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PCs were enriched from splenocytes or BM cells using AutoMACS system with biotinylated anti-CD138 (142512; Biolegend) and Streptavidin MicroBeads. 2 × 105 enriched cells were resuspended in 200 μl complete medium (RPMI-1640 medium [Wako] supplemented with 10% heat-inactivated fetal bovine serum, 1 mM sodium pyruvate, 50 μM 2-mercaptoethanol, 10 mM Hepes, pH 7.5, 100 U/ml penicillin, and 100 μg/ml streptomycin), and then cultured at 37°C in 5% CO2 for 0, 6, and 18 h. Cultured cells were immediately mixed with FITC-VAD-FMK (CaspGlow; BioVision) and incubated for 30 min at 37°C. Subsequently, these cells were stained with Abs and propidium iodide, and then analyzed by FCM.
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9

Isolation and Evaluation of Germinal Center B Cells

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iGB cells were generated as above. On day 4, fibroblasts and in vitro-differentiated plasmablasts (generally less than 10% frequency) were removed using biotinylated anti-H-2Kd (catalog no. 116604, BioLegend) and anti-CD138 (catalog no. 142511, BioLegend) followed by anti-biotin microbeads (Miltenyi Biotec); negative selection was performed using LS columns (Miltenyi Biotec). In some experiments, FACS was used to purify tdTomato+ iGB cells. For competitive experiments, purified WT iGBs (CD45.1/2+) were mixed 1:1 (ratio confirmed by flow cytometry before transfer) with CD45.2+ tdTomato+ Tfam−/− iGBs and injected intravenously (6 × 106 total cells in competitive setting or 3 × 106 cells in noncompetitive setting) into CD45.1+ or CD45.2+ congenic hosts that were immunized with SRBC according to the enhanced protocol to maximize the recruitment of transferred iGB cells into the GC. On day 6 after iGB adoptive transfer, spleens were collected and analyzed by flow cytometry and confocal imaging to assess GC entry.
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10

Multi-panel Flow Cytometry Analysis

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The following antibodies were used for surface staining at 4oC for 30 minutes: anti-CD4 (Biolegend, 1:200, RM4–5), anti-ICOS (Biolegend,1:200, 15F9), anti-CD19 (Biolegend,1:200, 6D5), anti-PD-1 (1:200, RMP1–30), anti-CXCR5 biotin (BD Biosciences,1:100, 2G8), anti-GL7 (BD Biosciences,1:200, GL-7), anti-HB-EGF/DTR (RandD Systems, 1:200, AF-259-NA), anti-CD38 (Biolegend, 1:200, 90), anti-CD138 (Biolegend, 1:200, 281–2), anti-IA (Biolegend,1:200, M5/114.15.2), anti-SiglecF (BD Biosciences, 1:200, E50–2440), anti-CD8a (Biolegend, 1:200, 53–6.7), anti-CD11c (Biolegend, 1:200, N418), anti-CD11b (Biolegend, 1:200, M1/70). For CXCR5 detection, streptavidin-BV421 (Biolegend, 1:400, 405225) was used at 4oC. In some cases, anti-IgE (BD Biosciences, 1:200, R35–72) was included to block IgE bound to cell surfaces. For intracellular staining, samples were fixed with the Foxp3 Fix/Perm buffer set according to the manufacturer’s instructions (eBioscience). Samples were then intracellularly stained with anti-IgG1 (BD Biosciences, 1:200, A85–1), anti-IgE (BD Biosciences, 1:200, R35–72), anti-FoxP3 (eBiosciences, 1:200, FJK-16S), anti-Ki67 (BD Biosciences, 1:100, B56), or anti-Glut1 (Abcam, 1:200, EPR3915). In some cases, a donkey anti-goat A647 secondary was used (Invitrogen, 1:400, A-21447). See the “Life Sciences Reporting Summary” for more details.
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