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10 protocols using 4 methylumbelliferyl β d galactopyranoside

1

Fluorometric Assay for Beta-Galactosidase

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Beta-galactosidase measurements were performed on whole water and <10 μm size fractions by collecting 10 mL sample and adding 4-methylumbelliferyl β-D-galactopyranoside (Sigma-Aldrich; St.Louis, USA) at a final concentration of 150 μM. Immediately after substrate addition and at two subsequent time points, typically an hour and 2 h, 1 mL sample was removed and frozen for later analysis. Upon thawing, fluorescence was quantified using a Tecan Spark 10 M multimode microplate reader with excitation and emission wavelengths set at 380/20 and 454/20 nm, respectively. Amount of substrate cleaved was calculated by fitting raw fluorescence to a standard curve of 4-methylumbellierone (Sigma-Aldrich) included in every plate read. To obtain optimal sample pH for fluorescence quantification, 50 mM sodium borate was added to both samples and standards prior to reading.
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2

Measuring β-galactosidase Activity in Fibroblasts

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In cooperation with the Villa Metabolica from the University of Medicine in Mainz, the β-galactosidase enzyme activity in fibroblasts derived from Glb1−/− and WT mice was determined using the substrate 4-methylumbelliferyl-β-d-galactopyranoside (Sigma-Aldrich Chemie GmbH, Taufkirchen, Germany) and the Hitachi fluorescence photometer (F-2000, Scientific Instruments, Schwäbisch Gmünd, Germany) as described [66 (link)]. The endogenous β-galactosidase activity was measured in nmol enzymatically hydrolyzed 4-methylumbelliferyl-β-d-galactopyranoside/mg/minute. Protein quantitation was performed in accordance with the Lowry protocol [67 (link)].
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3

Quantifying β-Gal and Neu1 Enzyme Activities

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For β-Gal enzyme activity, tissue lysates were diluted and 10 µL of each sample was transferred to a 96-well clear bottom black plate and incubated with 20 µL of β-Gal substrate (1 mM 4-methylumbelliferyl-β-D-galactopyranoside (Sigma, St. Louis, MO, USA), 100 mM Na-Acetate pH 4.3, 100 mM NaCl). For Neu1 activity, 5 µL of each sample was incubated with 5 µL of synthetic Neu1 substrate (4-methylumbelliferyl-α-D-N-acetylneuraminic acid (Sigma, St. Louis, MO, USA), 100 mM Na-Acetate pH 4.3, 100 mM NaCl). Fluorescent standards (40 µM 4-methylumbeliferone, 0.9% NaCl, 0.02% Na-Azide) were added and plates were incubated for 1 h at 37 °C. Reactions were stopped by adding 200 µL of 0.5 M carbonate buffer, pH 10.7, to each well. The fluorescence was measured on a plate reader (EX-355, EM-460). The net fluorescence values were compared with those of the linear fluorescent standard curve and used to calculate specific enzyme activities. Activities were calculated as nanomoles of substrate converted per hour per milligram of protein (nmol/h/mg).
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4

Fluorometric Assay for GCase and GALC Activities

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β-glucocerebrosidase (GCase) and β-galactocerebrosidase (GALC) activities were assayed with the fluorometric substrates 4-Methylumbelliferyl β-D-glucopyranoside (Sigma-Aldrich #M3633) and 4-Methylumbelliferyl β-D-galactopyranoside (Sigma-Aldrich #M1633), respectively. All reactions were carried out in triplicate in 96-well white Opti-Plates (PerkinElmer #6005290). For GCase activity, 1 µg homogenate protein was resuspended in 15 µL 0.1 M citric acid/0.2 M disodium phosphate (pH 5) and incubated with 30 µL of 10 mM substrate dissolved in 0.1 M citric acid/0.2 M disodium phosphate (pH 5), 0.5% sodium taurocholate, 0.25% Triton X-100 [32 (link)]. Plates were covered with sealing film, shaken, and incubated at 37 °C in the dark for 1 h. Reactions were stopped with 180 µL of ice-cold stop solution (0.2 M glycine/NaOH, pH 10.4). For GALC activity, 20 µg homogenate protein was resuspended in 25 µL citrate/phosphate buffer, pH 4.5, and incubated for 30 min with 25 µL of 1 mM substrate dissolved in 50 mM sodium citrate, pH 4.5, 125 mM NaCl, 0.5% Triton X-100. Reactions were stopped with 50 µL of ice-cold stop solution (0.5 M glycine/0.3 M NaOH, pH 10). Fluorescence was measured on a Tecan M200 Pro plate reader with excitation 360 nm and emission 446 nm. Relative activity was determined after subtraction of the substrate blank.
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5

Analysis of Lysosomal and ER Enzyme Activity

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The HA-degrading activity of HYAL1 was analyzed by "native" and "renatured protein" zymography as detailed in Puissant et al. [26 (link)]. Signals were quantified using the ImageJ software.
The enzymatic activity of lysosomal acid hydrolases and ER marker alkaline α-glucosidase was measured with the following 4-methylumbelliferyl-coupled specific substrates (Sigma-Aldrich): 4-methylumbelliferyl-β-D-galactopyranoside (β-galactosidase), 4-methylumbelliferyl-β-D-glucuronide hydrate (β-glucuronidase), 4-methylumbelliferyl-N-acetyl-β-D-glucosaminide (β-hexosaminidase) and 4-methylumbelliferyl-α-D-glucopyranoside (alkaline α-glucosidase). The samples were incubated at 37°C with 5 mM of substrate in a 50 mM citrate buffer, pH 4.5 containing 0.05% Triton X-100, except for the alkaline α-glucosidase activity assay. In this case, the reaction was conducted using 1 mM of substrate diluted in a 0.1 M glycine-NaOH solution (pH 9) containing 0.05% Triton X-100. After 6 h of reaction, a 0.1 M glycine-NaOH solution (pH 10.3) was added to stop the enzymatic activities and the fluorescence was measured at 495 nm.
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6

Fluorometric Enzyme Activity Assays

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Recombinant human glucosylceramidase (R&D Systems) activity was monitored using the artificial fluorescent substrate 4-methylumbelliferyl-β-d-glucopyranoside (Sigma) using the assay condition on the enzyme product datasheet. Recombinant human galactosylceramidase (R&D Systems) activity was monitored using the artificial fluorescent substrate 4-methylumbelliferyl-β-d-galactopyranoside (Sigma) using the assay conditions described on the enzyme product datasheet.
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7

Quantifying β-Galactosidase Activity Inhibition

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β-Gal activity was measured in a flat-bottomed 96-well plate. Azasugar solution (3 μL), 4.29 μg/μL leukocytes homogenate 1:10 (7 μL), and substrate 4-methylumbelliferyl β-d-galactopyranoside (1.47 mM, 20 μL, Sigma–Aldrich) in acetate buffer (0.1 M, pH 4.3) containing NaCl (0.1 M) and sodium azide (0.02%) were incubated at 37 °C for 1 h. The reaction was stopped by addition of sodium carbonate (200 μL; 0.5 M, pH 10.7) containing Triton X-100 (0.0025%), and the fluorescence 4-methylumbelliferone released by β-galactosidase activity was measured in SpectraMax M2 Microplate Reader (λex = 365 nm and λem = 435 nm; Molecular Devices LLC, San Jose, CA, US). Inhibition is given with respect to the control (without azasugar). Data are mean SD (n = 3).
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8

β-Galactosidase Self-Association Assay

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Hit compounds confirmed with the BRET assay were subjected to the previously developed β-gal activation assay, using commercially available β-gal protein (Sigma-Aldrich) (41 (link)). With this assay, we tested the effect of identified hit molecules on β-gal self-association. Briefly, galactosidase protein was dissolved in 5 mM sodium phosphate buffer, pH 7.4, at 60 μM concentration; the dissolved protein was then dispensed into a black ViewPlate-384 (PerkinElmer) at 20 μl/well. Next, hit compounds ranging from 180 μM down to 2.4 nM were incubated with the protein for 2.5 h on ice. The fluorogenic substrate, 4-methylumbelliferyl-β-D-galactopyranoside (Sigma-Aldrich), was added at 20 μl/well to achieve the final concentration of 1 mM (34 (link)) and then incubated for 2 h on ice, and the enzymatic activity was monitored according to fluorescence increases at 455 nm with an EnSpire multimode plate reader (PerkinElmer).
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9

Fluorometric Assay for β-Galactosidase Inhibition

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β-Gal activity was measured in a flat-bottomed 96-well plate. Compounds 1013 and 21 solution (3 μL), 4.29 μg/μL leukocytes homogenate 1:10 (7 μL), and substrate 4-methylumbelliferyl β-d-galactopyranoside (1.47 mM, 20 μL, Sigma–Aldrich) in acetate buffer (0.1 M, pH 4.3) containing NaCl (0.1 M) and sodium azide (0.02%) were incubated at 37 °C for 1 h. The reaction was stopped by the addition of sodium carbonate (200 μL; 0.5 M, pH 10.7) containing Triton X-100 (0.0025%), and the fluorescence 4-methylumbelliferone released by β-galactosidase activity was measured in SpectraMax M2 microplate reader (λex = 365 nm, λem = 435 nm; Molecular Devices). Inhibition is given with respect to the control (without compound). Percentage β-Gal inhibition is given with respect to the control (without compound). Data are mean SD (n = 3). For compounds showing β-Gal inhibitory activity higher than 40% at 1 mM concentration, the IC50 values were determined by measuring the initial hydrolysis rate with 4-methylumbelliferyl β-d-galactopyranoside (1.47 mM). Data obtained were fitted by using the appropriate equation (for more details, see the Supplementary Materials).
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10

Quantifying Tissue-Specific Beta-Galactosidase Activity

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Mice were euthanized with an overdose of ketamine (375 mg/kg) and xylazine (37.5 mg/kg). Brain, spinal cord, liver, kidney, spleen, and abdominal fat were collected, frozen on dry ice, and stored at −80°C. The brain was divided in the cerebrum and cerebellum/brainstem. Tissues were homogenized in lysis buffer (0.2 M sodium acetate, 0.1 M sodium chloride, 0.1% Triton X-100, pH 4.3) using a TissueLyser II (QIAGEN, Germantown, MD, USA) with 5 mm stainless-steel beads at 20 Hz for 30 s for three pulses.
Lysates underwent three freeze thaws alternating between a dry ice-ethanol bath and 37°C water bath. Lysates were centrifuged at 20,000 × g for 15 min at 4°C, and the supernatant was transferred to a new microcentrifuge tube and stored at −80°C. Total protein content was measured by the QuickStart Bradford Protein Assay (Bio-Rad, Hercules, CA, USA) with serial dilutions of bovine serum albumin as the protein standard. Total βgal activity was measured in the brain (coronal block containing thalamus), liver, and kidney using 4-methylumbelliferyl-β-D-galactopyranoside (Sigma-Aldrich, St. Louis, MO, USA) as the synthetic fluorogenic substrate, specific for βgal. Total βgal activity was determined by measuring the release of 4-methylumbelliferone at excitation 360 nm and emission 460 nm and normalized to total protein concentration.
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