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Anti rab7

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-Rab7 is a primary antibody that specifically recognizes the Rab7 protein. Rab7 is a small GTPase that plays a crucial role in the late endocytic pathway, regulating the transport and maturation of late endosomes and lysosomes. The Anti-Rab7 antibody can be used for the detection and localization of Rab7 in various cell and tissue types through techniques such as Western blotting, immunofluorescence, and immunohistochemistry.

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11 protocols using anti rab7

1

Immunofluorescence Assay for Organelle Markers

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Immunofluorescence studies were carried out as previously described [24] (link). Briefly, cells grown overnight on 24-well cover glasses (Menzel, 12 mm) were treated with Cy2/Cy3-labeled MOA in FCS-containing medium and fixed in 4% paraformaldehyde (PFA) at 4 °C for 10 min. Cells were washed and incubated with NH4Cl at room temperature for 15 min before being permeabilized with PBS containing 0.02% saponin and 0.2% bovine serum albumin (BSA). Cells were stained with either anti-EEA1 (1:50, BD Transduction Laboratories), anti-Calnexin (1:100, Enzo Life Science), anti-CTR 433 (1:100, kind gift of Michel Bornens, Curie Institut), anti-Giantin (1:100, Abcam), anti-TGN46 (1:100, Sigma Aldrich), anti-Transferrin receptor (TfR, 1:100, Life Technologies), anti-Rab11 (1:100, Cell Signaling), anti-Lamp1 (1:200, BD PharMingen), anti-Rab7 (1:100, Santa Cruz Biotech) or anti-β1 integrin (1:100, R&D Systems) antibodies diluted in permeabilization buffer, followed by either donkey anti-mouse Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch), donkey anti-rabbit Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch) or donkey anti-goat Cy3-labeled secondary antibody (1:100, Jackson ImmunoResearch) diluted in permeabilization buffer. Nuclei were stained using DAPI (300 nM, Life Technologies).
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2

Antibody Panel for Protein Analysis

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Antibodies used in the study were as follows: anti-Flag (F3165/F7425, Sigma), anti-Myc (9B11/71D10, Cell Signaling Technology (CST)), anti-HA (16B12, Biolegend and H6908, Sigma), anti-TRAF2 (sc-136999, Santa Cruz), anti-Rab5 (sc-46692, Santa Cruz), anti-Rab7 (sc-376362, Santa Cruz), anti-Sprouty 2 (sc-100862, Santa Cruz/ab85670, Abcam), anti-EGFR (sc-373746, Santa Cruz), anti-p-Tyr (9411, CST), anti-p-Ser/Thr (ab9344, Abcam and 05-368, Sigma), anti-Ser (sc-81514, Santa Cruz), anti-Thr (sc-5267, Santa Cruz), anti-Ubiquitin (sc-8017, Santa Cruz), anti-β-Actin (AC026, Abclonal), anti-GFP (AE011, Abclonal), anti-glutathione S-transferase (GST) (2622 S, CST), anti-V5 (R960-25, Thermo Fisher and 30801ES10, Yeasen), anti-Mouse/Rabbit IgG-peroxidase secondary antibody (A0545/A9044, Sigma), anti-Mouse IgG (light chain specific)-peroxidase secondary antibody (115-005-174, Jackson), and anti-DYRK1A polyclonal antibody has been previously described [30 (link)].
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3

Imaging Flow Cytometry for Immune Cell Analysis

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For imaging flow cytometry experiments: anti-CD8 APC-Cy7 (BD Biosciences, San Jose, CA or Tonbo Biosciences, San Diego, CA) and anti-CD56 PE-CF594 (BD Biosciences) were used for surface staining; all intracellular stains included anti-perforin D48 PE or BV421 (Biolegend, San Diego, CA) and anti-perforin δG9 FITC (Biolegend) and one of the following unconjugated antibodies: anti-CD71 (Cell Signaling Technology, Danvers, MA), anti-granzyme B (BD Biosciences), anti-rab3D (Abcam, Cambridge, MA), anti-rab4 (Pierce Antibodies, Waltham, MA), anti-rab5 (Cell Signaling Technology), anti-rab7 (Santa Cruz Biotechnology, Dallas, TX), anti-rab8 (Cell Signaling Technology), anti-rab11a (Cell Signaling Technology), anti-rab27a (Abcam), anti-rab35 (Abcam), anti-rab37 (Abcam), anti-syntaxin6 (Cell Signaling Technology), anti-syntaxin7 (R&D systems, Minneapolis, MN), anti-vti1b (Abcam), anti-VAMP3 (Abcam), anti-VAMP4 (Abcam), or anti-SNAP23 (Abcam). The unconjugated antibodies were detected using goat anti-rabbit AF647, chicken anti-goat AF647, or donkey anti-sheep AF647 secondary antibodies (Invitrogen, Carlsbad, CA). For confocal microscopy, perforin D48 FITC (Abcam), perforin δG9 AF647 (Biolegend), and goat anti-rabbit or donkey anti-sheep AF568 secondary antibodies (Invitrogen) were used, along with the selected rab or SNARE antibody.
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4

Antibody-mediated Autophagy Regulation

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Antibodies used were as follows: anti-118Y-p-paxillin, anti-31Y-p-paxillin and anti-397Y-p-FAK (Invitrogen); anti-GFP, anti-β-actin, anti-Rab7, anti-p62 and anti-LC3B (Santa Cruz); anti-416Y-p-Src and anti-NBR1 (Cell signaling), anti-GFP (Roche); anti-LAMP-1 and anti-HA (Abcam); anti-LC3B, anti-Atg12 and anti-c-Cbl (Novus); anti-Rab5a (BD transduction laboratory); anti-paxillin, anti-Src and anti-FAK (Millipore); anti-LAMP1 (R&D systems); anti-FLAG (Sigma). Anti-mouse and anti-rabbit IgG-peroxidase-conjugated secondary antibodies for Western blot assays were from Bio-Rad. Alexa Fluor594 and 488 conjugated secondary antibodies were from Life Technology. Alexa Fluor 647 conjugated secondary antibodies were from Millipore. Epidermal growth factor was from Gibco; Histodenz (Nycodenz), nocodazole and chloroquine (CQ) were from Sigma-Aldrich. When indicated CQ was used at a concentration of 20 μM, a non-toxic concentration found to induce optimal autophagy inhibition (based on changes in LC3I/II ratio), which is in accordance with previous studies (Sandilands et. al.).
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5

Comprehensive Antibody Panel for Alzheimer's Research

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anti-Aβ/APP 4G8 (mouse mAb, Covance), anti-Aβ/APP 6E10 (mouse mAb, Covance), anti-AβOs scFvA13 and scFvIm3 (ref. 13 (link)), anti-oligomer A11 (ref. 21 (link)) (rabbit pAb Millipore), anti-Aβ (rabbit mAb, Cell Signaling), anti α-Synuclein (mouse mAb, Abcam), anti-APP C-terminal fragment (rabbit pAb, Sigma), anti-APP N-terminal 22C11 (mouse mAb, Millipore), anti-V5 (mouse mAb Invitrogen, and rabbit pAb Sigma), anti-V5-HRP (mouse mAb, Sigma), anti-His tag (mouse mAb Millipore), anti-KDEL (mouse mAb, Assay Design/Stressgen) (kind gift of Prof. R. Sitia, HSR San Raffaele, Milan), anti-mTOR (rabbit pAb, Cell Signaling), anti-phospho-mTOR (rabbit pAb, Cell Signaling), anti-P70S6K (rabbit pAb, Cell Signaling) (kind gift of Dr G. Amadoro, CNR, Rome), anti-phospho-P70S6K (rabbit pAb, Cell Signaling), anti ERK1/2 (rabbit pAb, Cell Signaling), anti phosho-ERK1/2 (rabbit pAb, Cell Signaling), anti phospho-CREB (rabbit pAb, Cell Signaling), anti β-Actin (mouse mAb and rabbit pAb, Sigma), anti-calnexin (rabbit pAb, Sigma), anti-GM130 (mouse mAb, Covance), anti-Golgi 58K (mouse mAb, Sigma), anti-Rab3A (mouse mAb, Sigma), anti-Rab5 (rabbit pAb, Abcam), anti-Rab7 (goat pAb, Santa Cruz), anti-TGN46 (rabbit, pAb), anti-LAMP-1 (rabbit pAb, Abcam). anti-Rab5, anti-Rab7, anti-TGN46 are kind gift of Dr V. Triaca, CNR, Rome.
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6

Signaling Pathway Characterization Protocol

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Antibodies anti-HA (Babco), anti-RSK2, anti-APPL1, anti-Rab7, anti-TrkB (Santa Cruz Bio-technology), anti-PLD1, anti-ERK, anti-phospho-ERK, (New England BioLabs), anti-β-tubulin, anti-CREB (Millipore), anti-GAPDH, anti-phospho-CREB (Ser-133), anti-mTOR, anti-phospho-mTOR (Ser-2481), anti-phospho-S6K (Thr-389), anti-phospho-S6K (Thr-421/Ser-424), anti-PEA15 (Cell Signalling), anti-Rab5 (Transduction Laboratories) were used. Plasmids have been described previously15 (link)17 (link). ON-TARGETplus siRNA were obtained from Darmacon and BDNF was from Invitrogen.
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7

Immunofluorescence Antibody Protocol

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Primary antibodies used in this project and their final concentrations were as follows: anti-GFP (Life technology, Carlsbad, CA, USA, 1:1000), anti-RFP (Rockland, Limerick, PA, USA, 1:1000), anti-β-actin (Sigma-Aldrich, St. Louis, MO, USA, 1:5000), anti-GM130 (BD, Franklin Lakes, NJ, USA, 1:500), anti-EEA1 (BD, Franklin Lakes, NJ, USA, 1:500), anti-Rab 7 (Santa Cruz, Santa Cruz, CA, USA, 1:500), anti-LAMP1 (DSHB, Iowa, IA, USA, 1:500), anti-PRR/ATP6AP2 (Sigma-Aldrich, St. Louis, MO, USA, 1:500), anti-APP (Cell Signaling Technology, Danvers, MA, USA, 1:500), anti-sAPPβ (a gift from Tae-Wan Kim, 1:500). All the corresponding conjugated secondary antibody (1:1000) were purchased from Invitrogen (Waltham, MA, USA). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI) (1:1000, Roche, Basel, Switzerland).
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8

Tissue Cell Type and Organelle Immunostaining

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Tissue sections were blocked with 5% BSA with 0.5%Triton X-100 for 45 min, and then incubated with primary antibodies overnight. For tissues cell types analysis, anti-Villin (Santa Cruz Biotechnology, sc-58897), anti-Alblumin (abcam, ab207327), anti-SP-C (Santa Cruz Biotechnology, sc-518029), anti-nephrin (Santa Cruz Biotechnology, sc-377246) were used, and for sEV related organelles, anti-lamp2 (Santa Cruz Biotechnology, sc-18822), anti-Rab7 (Santa Cruz Biotechnology, sc-376362), anti-EEA1 (Santa Cruz Biotechnology, sc-137130) were used. After incubation with primary antibody, samples were incubated with appropriate secondary antibody (Invitrogen, Goat anti-Rabbit IgG (H + L)-Alexa Fluor Plus647, A32733 and Goat anti-Rabbit IgG (H + L)-Alexa Fluor Plus647, A32728) for 1 h and then Hoechst (Invitrogen, H1399) was used for nuclei staining.
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9

Visualizing miR-200a Delivery and Targets

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Cells were seeded onto sterile cover slips and placed in 24-well plates. miR-200a-MB-MNPs or scrambled molecular beacon-conjugated MNPs (scrambled-MB-MNPs) were added to the cells (20 µg/ml) and incubated for 30 minutes at 37°C. The cells were then fixed with a 4% paraformaldehyde solution (Sigma), and immunostaining for ZEB1, E-cadherin, Ago-2 or Rab7 was performed using anti-ZEB1 (Santa Cruz Biotechnology), anti-E-cadherin (BD Biosciences), anti-Ago-2 (Abcam) and anti-Rab7 (Santa Cruz Biotechnology) antibodies. The dye 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) was added for nuclear counterstaining (Invitrogen). All multicolor fluorescence images were obtained using confocal laser-scanning microscopy (LSM5 Meta; Carl Zeiss).
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10

Visualization of EGFR Localization and Colocalization

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Cells (1×105/ml) were seeded onto cover glasses in 24-well plates and cultured without serum overnight. For visualization of surface EGFRs, cells were fixed with 3.7% formaldehyde for 20 min. For visualization of EGFR-Rab5/Rab7 colocalizations, cells were fixed and then permeabilized with 0.2% Triton X-100 for 20 min. After being washed with PBS twice and blocked with 2% BSA, cells were incubated with anti-EGFR (cat. no. 352904; BioLegend, dilution 1:1,000), anti-Rab5 (cat. no. sc-47792; Santa Cruz Biotechnology; dilution 1:1,000), and anti-Rab7 (cat. no. sc-376362; Santa Cruz Biotechnology; dilution 1:1,000) antibodies overnight at 4°C. Cells were then washed with PBS twice and incubated with Alexa Fluor 488-conjugated secondary antibodies (cat. no. A32723; Invitrogen; Thermo Fisher Scientific, Inc.; dilution 1:1,000) for 1 h at room temperature. Finally, cells were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Invitrogen; Thermo Fisher Scientific, Inc.). Fluorescence confocal microscopy (Carl Zeiss, Thornwood, NY, USA) was used to assess labeling and its distribution.
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