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10 protocols using yttrium

1

Synthesis of Rare-Earth Oxide and Acetate Nanoparticles

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yttrium(III) oxide (Y2O3, 99.99%), ytterbium (III) oxide (Yb2O3, 99.9%), erbium (III) oxide (Er2O3, 99.99%), neodymium (III) oxide (Nd2O3, 99.99%), yttrium (III) acetate hydrate (Y(CH3COO)3, 99.99%), ytterbium (III) acetate tetrahydrate (Yb(CH3COO)3•4H2O, 99.99%), neodymium (III) acetate hydrate (Nd(CH3COO)3, 99.99%), trifluoroacetic acid (CF3COOH, 99%), sodium trifluoroacetate (CF3COONa, 98%), oleic acid (90%, tech grade) and octadecene (90%, tech grade), Indocyanine green, ammonia fluoride (NH4F, ≥99.99% trace metals basis), sodium hydroxide (NaOH, anhydrous, ≥97%) were obtained from Sigma Aldrich. Methanol (ACS reagent grade, ≥99.8%) and hexane (ACS reagent grade, ≥98.5%) were purchased from Fisher Scientific. All chemical reagents were used as received without any further purification.
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2

Quantifying Mineral Composition of Hydrogels

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The calcium (Ca) and phosphorus (P) concentrations as well as the Ca to P ratio, were determined using a 5100 Synchronous Vertical Dual View optical emission spectrometer (Agilent Technologies, Santa Clara, CA, USA). Therefore, hydrogels were dried, dissolved in 3 mL of 14 M HNO3 (Fisher Scientific, Loughborough, UK), then further diluted (1:100) using 0.3 M HNO3. Standard solutions, with Ca (Fisher Scientific, UK) and P (Alfa Aesar, Heysham, UK) with concentrations ranging from 0 to 250 mg/l were used for calibration. Additionally, all solutions contained Yttrium (Sigma-Aldrich, St. Louis, MO, USA), which was used as an internal standard to account for exogenous effects. Measurements were taken in triplicate. For statistical analysis, one-way ANOVA was performed.
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3

Trace Element Analysis Using ICP-MS

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The ultrapure water used in this work (18.2 MΩ.cm at 25 °C and TOC ≤ 5 ppb) was obtained from a Milli-Q Integral 3 System (Millipore, Billerica USA). For acidic digestion, 67–69% traceSELECT™ ultra HNO3 (Honeywell International, USA, Product Code 02650) and 30% H2O2 (Sigma-Aldrich, St. Louis, USA, Product Code 95321) solutions were used. Yttrium (Product Code 01357) and silicon standards (Product Code 08729) for ICP-MS, as well as ammonium carbonate (Product Code 379999), were purchased from Sigma-Aldrich (Sigma-Aldrich Corp., St. Louis, USA).
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4

Elemental Analysis of Bean Flour and Liver

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The bean flour samples and liver samples (0.5 g) and serum (100 μL) were treated with 3.0 mL of 60:40 HNO3 and HClO4 mixture into a Pyrex glass tube and left for overnight to destroy organic matter. The mixture was then heated to 120 °C for two hours and 0.25 mL of 40 µg/g Yttrium (Sigma-Aldrich, St. Louis, MO, USA) added as an internal standard to compensate for any drift during the subsequent inductively coupled plasma atomic emission spectrometer (ICP-AES) analysis. The temperature of the heating block was then raised to 145 °C for 2 h. Then, the temperature of the heating block raised to 190 °C for ten minutes and turned off. The cooled samples in the tubes were then diluted to 20 mL, vortexed and transferred into auto sample tubes to analyze via ICP-AES. The model of the ICP used was a Thermo iCAP 6500 series (Thermo Jarrell Ash Corp., Franklin, MA, USA).
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5

TXRF Analysis of SELENBP1 Proteins

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Cu and Se content of recombinant wildtype and mutant SELENBP1 was analyzed by total reflection X-ray fluorescence (TXRF) spectrometry, using a bench-top TXRF spectrometer (S4 T-STAR, Bruker Nano, Berlin, Germany) as described [18 ]. Wildtype and mutant proteins were diluted with HBS to a concentration of 7.5 μM (420 mg/L) and combined with 1 mg/L Yttrium (Merck/Millipore, Darmstadt, Germany) as internal standard. 10 μl of each sample were placed on a siliconized sample carrier and dried at 40 °C. All samples were measured in duplicates for 1000 s each.
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6

Trace Element Analysis in Biological Samples

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Cu content of cell lysates and media samples was measured using a bench-top total reflection X-ray fluorescence (TXRF) spectrometer (S2 Picofox™, Bruker Nano GmbH, Berlin, Germany). As internal standard 1 mg/mL Yttrium (Merck/Millipore) was used. 10 μL of each sample were placed on siliconized quartz glass carriers and dried at 40 °C. Samples were measured in duplicates for up to 500 s. Cu and Se content in liver and colon tissue and Se content of HepG2 cells were determined using ICP-MS/MS. Preparation of samples was described previously [29 (link)]. Briefly, samples were weighted into PTFE microwave vessels. HNO3 (65% (v/v), Suprapure®, Merck/Millipore), H2O2 (30% (v/v), Sigma-Aldrich/Merck), rhodium (Rh) as internal standard, and 77Se as isotope dilution standard were added before digestion using a Mars 6 microwave digestion system (CEM, Kamp-Lintfort, Germany). After digestion, samples were diluted to achieve final concentrations of 2.93% (v/v) HNO3, 10 μg/L77Se, and 1 μg/L Rh. The samples were measured using ICP-MS/MS (8800 ICP-QQQ-MS, Agilent Technologies) and analyzed as described earlier [29 (link)]. Certified reference materials, namely fish muscle (ERM BB-422) and pig kidney (ERM BB-186) were used as quality control of digestion and to cross validate TE analysis using TXRF and ICP-MS/MS.
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7

Quantifying Selenium in Bacterial Cultures

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Se-enriched culture media and bacteria were collected at the beginning and at the end of the 48-h growth period. After harvesting, the bacterial pellets were washed, weighed and lysed via sonication. The Se content in the samples was measured in duplicates by total reflection X-ray fluorescence (TXRF) spectrometry, using a bench-top TXRF spectrometer (S2 Picofox, Bruker Nano, Berlin, Germany) with 1 mg/L Yttrium (Merck/Millipore; Darmstadt, Germany) as internal standard, as described [32 (link),33 (link)].
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8

TXRF Analysis of Selenium and Iron

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Selenium and iron concentrations were determined by Total Reflection X-ray Fluorescence spectrometry (TXRF), as reported before (28 (link)). In short, plasma was spiked with 1000 µg/l gallium (#16639, Sigma/Merck) as an internal standard, while muscle lysate based on RIPA buffer was spiked with 1 mg/l yttrium (#1198090100, Merck/Millipore). For quantification, plasma and muscle lysates spiked with internal standard were applied to non-siliconized and siliconized sample carriers, respectively, dried at 40°C, and measured for 1000 s in an X-ray fluorescence spectrometer (S4 T-STAR, Bruker). The trace element content of the muscle was normalized to the total protein content of the samples, determined with the DC protein assay reagent (#500-0114; Bio-Rad).
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9

Trace Element Analysis in Biological Samples

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Trace element concentrations were measured in rat plasma and tissue samples, human serum, and cell lysates using a total reflection X-ray fluorescence (TXRF) spectrometer (Bruker Nano GmbH, Berlin, Germany) and TEsprit software version 1.0. As internal standard for cells and rat tissue, 1 mg/L yttrium (Merck Millipore, Burlington, MA, USA; 119809) and for serum or plasma 1 mg/L gallium (Alfa Aesar/ Thermo Fisher Scientific, Kandel, Germany; 88066) was used. 10 µL of each sample were placed on siliconized (except plasma) quartz glass carriers and dried at 40 °C. Samples were measured in duplicates for up to 1000 s.
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10

Quantitative Mineral Analysis of Ash

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Samples were weighed in crucibles with lids. The samples were dried in an oven at 70°C overnight and cooled in a desiccator. Samples were charred over a Bunsen burner flame at a low heat to eliminate smoke before placing in a muffle furnace at 525°C for three hours during which all the organic matter was oxidized leaving remnants of clean white ash.
Samples were oven-dried for 48 hours, cooled in a desiccator and reweighed. Mineral (Fe, Mg, Zn, Ca, Cu and Mn) concentrations in the samples were analysed using Inductively Coupled Plasma Optical Emission Spectrometry (ICP-OES, Thermo-Fisher). Plasma parameters and sample aspiration methods were performed according to the manufacturer's recommendations. Mineral concentrations were extrapolated from the standard curve in the range of 0.1 -10 µg/mL. The internal standard, Yttrium (Merck Millipore), was added to each sample according to manufacturer's specification to correct for sample losses due to volatility and evaporation.
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