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37 protocols using avance 3 300

1

Facile Synthesis of Functionalized Organic Compounds

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All reagents and chemicals from commercial sources were used without further purification. Solvents were dried and purified using standard techniques. Flash chromatography was performed with analytical-grade solvents using Aldrich silica gel (technical grade, pore size 60Å, 230–400 mesh particle size). Flexible plates ALUGRAM® Xtra SIL G UV254 from MACHEREY-NAGEL were used for TLC. Compounds were detected by UV irradiation (Bioblock Scientific). NMR spectra were recorded with a Bruker AVANCE III 300 (1H, 300 MHz and 13C, 75 MHz) or a Bruker AVANCE DRX500 (1H, 500 MHz; 13C, 125 MHz). Chemical shifts are given in ppm relative to TMS and coupling constants J in Hz. Matrix Assisted Laser Desorption/Ionization was performed on MALDI-TOF MS BIFLEX III Bruker Daltonics spectrometer using DCTB+ as matrix. High resolution mass spectrometry (HRMS) was performed with a JEOL JMS-700 B/E.
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2

Characterization of Chitosan and Collagen

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FTIR analysis of chitosan and collagen powders was performed using a Nicolet 5DXB spectrometer (Thermo Scientific, Boston, MA, USA). The polymer powders were analyzed by adding the polymer to a KBr powder. The polymer and KBr mixture were then pressed to form a thin film. The films were analyzed by averaging 32 scans at a resolution of 2 cm−1 over a range of 500–4000 cm−1. 1H NMR analysis was performed to verify the degree of deacetylation of the chitosan scaffold. Chitosan was first dissolved in 2.5% DCl D2O at 10 mg/mL. A 300 MHz spectrometer (Bruker Avance III 300, Billerica, MA, USA) was used to acquire the spectra in triplicates at 25 °C. The degree of deacetylation was determined by calculating the integrals of the protons on the H-Acetyl group and the protons on the H2/H6 group. The following equation was then used to determine the degree of deacetylation: DD%=12IHAcetylIH2/H6×100
where DD (%) is the degree of deacetylation in percent, IH-Acetyl is the integral of the protons on the acetylated group, and IH2/H6 is the integral of the protons on the monomer hexose rings.
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3

NMR Analysis of Chitosan and Silk Modifications

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The changes in functional groups before and after modification of chitosan and silk were recorded by nuclear magnetic resonance (AVANCE III 300, BRUKER, Ettlingen, Germany).
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4

Structural Analysis of Natural Compounds

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Optical rotations were measured with a JASCO P-2000 polarimeter (Jasco, Tokyo, Japan). UV spectra were recorded on a JASCO V-550 spectrophotometer (Jasco, Tokyo, Japan). IR spectra were performed on a FT/IR-6600 spectrometer (Jasco, Tokyo, Japan). NMR spectra were acquired on a Bruker Avance III-600 and a Bruker Avance III-300 instruments (Bruker, Bremerhaven, Germany). High-resolution mass spectra were obtained on a LCQ Advantage MAX (Finnign, USA). CD spectrum was measured on a Chirascan spectropolarimeter (Applied Photophysics, Ltd.). X-ray Crystallography was collected at 100 K on a Rigaku Oxford Diffraction Supernova Dual Source, Cu at Zero equipped with an AtlasS2 CCD using Cu Kα radiation. Silica gel (80−100 and 200−300 mesh, Qingdao Haiyang, Qingdao, China), Sephadex LH-20 (Pharmadex), and RP-C18 (AA12S50, YMC) were used for column chromatography. Preparative HPLC was carried out using an Ultimate 3000 instrument (Thermo Scientific, USA) with a Waters XBridge RP-C18 column (250 mm×10 mm). Analytical HPLC was run on using an Agilent 1260 instrument (Agilent, USA) with a Phenomenex Synergi RP-C18 column (250 mm×4.6 mm).
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5

Nitrogen/Argon Inert Synthesis and NMR Characterization

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All manipulations were performed using a combination of glovebox, high vacuum and Schlenk techniques under a nitrogen or
argon atmosphere.66 Solvents were purified and degassed by standard procedures.
NMR spectra were measured on Bruker Avance III 300, Bruker Avance III 400, and Bruker Avance III 500 spectrometers. 1H
NMR spectra are reported in ppm relative to SiMe4 (δ = 0) and were referenced internally with respect to the
protio solvent impurity (δ = 7.26 for CDCl3, δ = 7.16 for C6D5H, and δ =
1.94 for CD2HCN).67 Coupling constants are reported in hertz.
H(sebenzimMe) was prepared by the literature procedure,6a (link) while
1-methylbenzimidazole was purchased from Alfa Aesar and all other chemicals were purchased from Sigma Aldrich and used as
supplied.
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6

Analytical Techniques for Chemical Characterization

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All chemicals including media components were purchased from Sigma-Aldrich (St. Louis, MO), VWR (Radnor, PA) or Fisher Scientific (Pittsburgh, PA) and were used without further purification. HPLC analysis was performed using a Dionex Ultimate 3000 instrument equipped with a photo diode array (PDA) detector and the specified column (see below). LC-MS analysis was performed using an API 2000 electrospray ionization (ESI) mass spectrometer (AB SCIEX) connected to the HPLC system. Post-column splitting (1:4) was used to simultaneously monitor MS and uv-visible spectra. NMR spectra were obtained using Bruker Avance III 300 and Avance 500 spectrometers housed in the NMR Core Facility in the Department of Chemistry and Chemical Biology at the University of New Mexico. Chemical shifts (δ in parts per million) are reported relative to that of the solvent peak (δ = 2.50 ppm and 39.5 ppm for DMSO-d6 in 1H and 13C NMR spectra, respectively). High resolution MS data was obtained using a Waters LCT Premier ESI-TOF mass spectrometer housed in the Mass Spectrometry and Proteomics Core Facility in the Department of Chemistry and Chemical Biology at the University of New Mexico. Vector NTI Advance 10 (Life Technologies, Carlsbad, CA) was used for routine sequence analysis.
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7

Methacrylated Nanogel Synthesis

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To obtain polymerizable nanogels, thiol functionalized nanogels were dissolved in chloroform with excess IEM relative to the residual thiol functional content and with a catalytic amount of DBTDL. The reaction proceeded overnight at 40 °C. The functionalized nanogel product was precipitated into 10× volume of ethyl ether, redispersed in chloroform three times and viscous liquid methacrylated nanogels were obtained after vacuum removal of residual solvent (yield: ~95%). Proton nuclear magnetic resonance (1H NMR; Bruker Avance-III 300, NMR lab, University of Colorado) was used to aid nanogel structural determination in deuterated chloroform with spectra obtained from 64 scans. All data was analyzed with MestRenova 9.0 software.
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8

Synthesis and Characterization of Heterocyclic Compounds

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Commercially available chemicals, including 2-(4-bromophenyl)-4,6-diphenyl-1,3,5-triazine (TCI), 10,11-dihydro-5H-dibenz[b,f]azepine (TCI), 9,10-dihydro-9,9-dimethylacridine (TCI), phenoxazine (Alfa-Aesar), phenothiazine (TCI), potassium carbonate (Sigma-Aldrich), palladium(II) acetate (Sigma-Aldrich), tri-tert-butylphosphine (Sigma-Aldrich), and DMAC-Ph (TCI) were used without further purification, unless otherwise stated. All glassware, magnetic stir bars, syringes, and needles were dried in a convection oven at 120 °C. Reactions were monitored by using thin-layer chromatography (TLC). Commercial TLC plates (silica gel 254, Merck Co.) were developed, and the spots were visualized under UV irradiation at wavelengths of 254 or 365 nm. Silica gel column chromatography was performed with silica gel 60G (particle size 0.040–0.063 mm, Merck Co.). 1H NMR (300 MHz) and 13C{1H} NMR (126 MHz) spectra were collected with Bruker, AVANCE III 300 and 500 spectrometers, respectively. Chemical shifts were referenced to the peaks due to a residual solvent. Low- and high-resolution mass spectra were recorded by using an Agilent Technologies 6890 series mass spectrometer.
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9

Quantitative NMR Analysis of Methane Sulfonic Acid

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The samples for 1H-NMR measurements were prepared by combining a specific number of moles of methane sulfonic acid (MSA) (CH3SO3H, Mw = 96.11 g/mol) with a specific mole number of distilled water ( H2O ; DW; Sigma Aldrich) in an argon glovebox. Each prepared sample was transferred to a standard 5 mm NMR tube (Boro-300-5-8; Deutero GmbH). A glass capillary with a diameter of 1 mm and an inner diameter of 0.8 mm was filled with Trimethylsilylpropanoic acid (TSP) in deuterium oxide ( D2O ; Sigma Aldrich, 99.9% atoms D ) at a concentration of 0.02 mM and placed inside the 5 mm NMR tube. D2O served as the frequency lock, and TSP was used as the chemical shift reference. The NMR samples were degassed by connecting the NMR tubes to a vacuum pump at 800 mb for 50 s while simultaneously sonicating them. The pressure was then raised to normal atmospheric pressure using dry argon. The 1H-NMR spectra of the intracellular extracted samples, along with the two reference samples, were acquired using a broadband high-resolution 300.13 MHz NMR Bruker spectrometer Bruker Avance III 300 equipped with a room temperature NMR probe (BBO model-Bruker) at 293 K. The acquisition and processing of NMR spectra were analyzed using the Bruker TopSpin 3.5 software. The 1H-NMR spectra were acquired using the standard 90° single-pulse experiment (Bruker pulse sequence zg ).
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10

Comprehensive Hydrogel Characterization

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Fourier-transform infrared spectroscopy (FTIR, Thermo spectrometer), thermogravimetric analysis (TGA, TA Instrument; model SDT Q600), field emission scanning electron microscopy (FESEM, TESCAN MIRA II microscope), X-ray diffraction (XRD, Philips PW1730), Zeta potential measurements (NanoBrook Pals Zeta Potential Analyzer), and nuclear magnetic resonance (NMR, 300 MHz Bruker Avance-III 300) have been utilized to characterize the hydrogel samples.
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