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11 protocols using elastase from porcine pancreas

1

Proteolytic Activities in Intestinal Samples

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Elastolytic, glutenasic, and mucolytic activities were measured in small intestinal contents and in bacterial culture supernatants. Glutenasic activity was also determined in human duodenal biopsies. Glutenasic and mucolytic activity were measured by bioassay (1.6% agar plates) using gluten 1% (Sigma-Aldrich) or mucin from porcine stomach type III 0.5% (Sigma-Aldrich), respectively62 (link). Samples were incubated in the gluten or mucin-agar plated for 14 h. Amido black was used to stain protein in the mucin bioassay. Positive proteolytic activity was determined by the presence of a halo surrounding the inoculation site on substrate-containing media. Elastase activity was analyzed using Suc-Ala3-pNa (Sigma-Aldrich) or FITC-elastin (AnaSpec) substrates. Briefly, small intestinal washes or bacterial supernatants were incubated in 50 mM Tris-HCl buffer pH 8.2 supplemented with 1 mM CaCl2, 50 mM NaCl, and Triton 0.25% at 37 °C with the different substrates. Absorbance and fluorescence were measured at various time points. Units of enzyme were determined using standard curves of elastase from porcine pancreas (Sigma-Aldrich). Tryptic activity was determined using Trypsin Activity Assay Kit from Abcam following the manufacturer's recommendations (Abcam, Cambridge, UK).
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2

Elastase-Induced Pulmonary Dysfunction

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WT and C57/BL6J-Uox KO female and male (12- or 13-week-old) mice were administrated intratracheally with elastase from porcine pancreas (male: 0.06 mg per mouse; female: 0.05 mg per mouse) (Sigma-Aldrich Japan) dissolved in saline (Otsuka Pharmaceutical). As control, saline was treated intratracheally. After 3 weeks, we measured the pulmonary function using the flexiVent system and then collected mouse lungs and blood.
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3

Antibodies and Reagents for β1-Adrenergic Receptor Analysis

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Antibodies were from the following sources: rabbit polyclonal anti-β1AR (Cat# ab3442, raised against residues 394-408 in human β1-ARs) was from Abcam. Mouse monoclonal anti-FLAG M2 antibody (Cat# F1804) was from Sigma-Aldrich. The Abcam rabbit polyclonal anti-β1AR was validated in our previous publication.3 IRDye 800CW goat anti-rabbit IgG (Cat# 925-32211) and IRDye 680RD goat anti-mouse IgG (Cat# 925-68070) secondary antibodies were from LI-COR Biosciences. Elastase from porcine pancreas (Cat# E0258), GM6001 (Cat# 364206), GI254023X (ADAM-10 inhibitor, Cat# SML0789), matrix metalloproteinase (MMP)-2/MMP-9 inhibitor I (Cat# 444241), MMP-9/MMP-13 inhibitor I (Cat# 444252), forskolin (Cat# F3917), isoproterenol (Iso) (Cat# 420355), propranolol (Cat# P0884), sotalol (Cat# S0278), and theophylline (Cat# T1633) were from Sigma-Aldrich. MMP-2/MMP-3 inhibitor I (Cat# sc-295483) and TAPI-2 (Cat# sc-205851) were from Santa Cruz Biotechnology. GW280264X (ADAM-10/ADAM-17 inhibitor, Cat# 7030) was from AOBIOUS Inc. α2-3,6,8,9 neuraminidase A (Cat #: P0722) was from New England BioLabs Inc. All other chemicals were reagent grade.
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4

Antioxidant and Enzymatic Inhibition Assays

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Folin–Ciocalteu’s phenol reagent, aluminum chloride (AlCl3), dimethyl sulfoxide (DMSO), sodium acetate (NaOAc), quercetin, 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azinobis-(3-ethylbenzthiazoline-6-sulphonic acid) (ABTS), L-ascorbic acid, potassium persulfate (K2S2O8), elastase from porcine pancreas, epigallocatechin gallate (EGCG), N-succinyl-Ala-Ala-Ala-p-nitroanilide (SANA), tyrosinase from mushroom, kojic acid (KA), and 3,4-dihydroxy-L-phenylalanine (L-DOPA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Sodium carbonate (Na2CO3) was purchased from Merck (Darmstadt, Germany). Gallic acid was purchased from TCI America (Portland, OR, USA). Dipotassium phosphate (K2HPO4) and monobasic potassium phosphate (KH2PO4) were purchased from HiMedia (Mumbai, India). Tris base was purchased from Vivantis Technologies (Shah Alam, Malaysia). Ethanol and methanol were purchased from RCI Labscan (Bangkok, Thailand). All chemicals and reagents were analytical grades.
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5

Isolation and Culture of Smooth Muscle Cells

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HEK293 cells and HeLa cells were cultured in Dulbecco’s modified eagle medium supplemented with 10% fetal bovine serum and antibiotics. Cells were transfected with plasmid DNAs encoding TRPC3, TRPC6, or TRPC7 by using X-tremeGENE™ 9 reagent (Roche, Basel, Switzerland) according to manufacturer’s instruction. Mouse aortic smooth muscle cells were isolated from aorta of 6–8 weeks old 129/Sv mice. Thoracic aorta was removed and cleaned from perivascular fat. The aorta was incubated with enzyme solution (1 mg/mL collagenase type 2 (Worthington, Columbus, OH, USA), 1 mg/mL soybean trypsin inhibitor (Sigma, St. Louis, MO, USA), and 0.75 units/mL elastase from porcine pancreas (Sigma, St. Louis, MO, USA) dissolved in Hank’s balanced salt solution (Thermo Fisher Scientific, Waltham, MA, USA) for 10 min at 37 °C. Adventitia and endothelium were then removed. Remaining medial layer was cut into small pieces and incubated with enzyme solution for 1–1.5 h at 37 °C. After trituration, cells were plated and cultured in DMEM supplemented with 20% FBS and penicillin/streptomycin at 37 °C with 5% CO2. Cells were used between 3rd to 7th passages.
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6

In Vitro Skin Cell Assays

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3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were obtained from Thermo Scientific, (Waltham, MA, USA). The phosphate-buffered saline (PBS), fetal bovine serum (FBS), penicillin-streptomycin (10,000 U/mL), Dulbecco’s modified Eagle’s medium (DMEM), and trypsin-EDTA were obtained from Gibco (Gaithersburg, MD, USA). Sodium carbonate (Na2CO3), sodium hydrogen carbonate (NaHCO3), disodium hydrogen phosphate (Na2HPO4), potassium dihydrogen phosphate (KH2HPO4), and sodium chloride (NaCl) were obtained from Ajax Finechem Pty Limited (Taren Point, Australia). Polyvinyl alcohol (PVA) was obtained from Chem-Supply Pty Ltd. (Gillman, Australia). Direct red 80, picric acid, human collagen type I, ascorbic acid, L-DOPA, α-MSH, tyrosinase enzyme (≥2000 units/mg solid), collagenase from Clostridium histolyticum (0.25–1.0 FALGPA units/mg solid, ≥125 CDU/mg solid), elastase from porcine pancreas (lyophilized powder ≥ 50 units/mg protein), and gelatin type B were obtained from Sigma-Aldrich (St. Louis, MO, USA). B16F10 (murine melanoma cell line), human keratinocyte cell line (HaCaT), and primary normal human dermal fibroblasts (NHDF) were purchased from American Type Culture Collection, Manassas, VA, USA.
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7

Structural Studies of RC3H Proteins

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All crystals were grown at 20 °C using either the sitting or hanging drop vaporization methods. For RC3H1, the His6-tag-removed RC3H1 (a.a. 1–445) protein at a 25 mg/mL concentration was first mixed with elastase from porcine pancreas (Sigma-Aldrich) at a ratio of 1:1000 (w/w), then immediately mixed with a reservoir solution containing 25% PEG-8000, 0.2 M NaCl, 0.1 M HEPES, pH 7.5, 5% ethyl glycol at a ratio of 1:1. Crystals of the apo-form RC3H2 RNA-binding region were grown in a sitting drop mixed from 2 μL protein solution (C-terminal His6-tagged, 29 mg/mL) with 1 μL well solution containing 3.2 M NaCl, 0.1 M sodium acetate, pH 4.6. For the RC3H2/Ier3 RNA complex, N-terminal His6-tag-removed RC3H2 protein was first diluted to 6.7 mg/ml, then mixed with Ier3 RNA solution (2 mM) at a molar ratio of 1:1.5 before being set in a hanging drop. The drop was mixed from 1.5 μL protein/RNA complex and 1.5 μL well solution consisting of 17% PEG-10K, 0.1 M Bis-Tris, pH 6.5, and 5% ethyl glycol. All crystals for data collection were cryo-protected via an initial immersion in the corresponding well solution plus 10–15% ethylene glycol, then an immersion in Paratone-N (Hampton Research), before being flash-frozen in liquid nitrogen.
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8

Comparative Analysis of Cell Viability and Extracellular Matrix Markers

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Iscove’s modified Dulbecco’s medium (IMDM), Dulbecco’s Modified Eagles medium (DMEM), Dulbecco’s phosphate-buffered saline (DPBS), fetal bovine serum (FBS), penicillin, and streptomycin were purchased from Life Technologies Inc. (Grand Island, NY, USA). 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and dimethyl sulfoxide (DMSO) were purchased from Junsei Chemical Co., Ltd. (Tokyo, Japan). N-Succinyl-Ala-Ala-Ala-p-nitroanilide (STANA), elastase from porcine pancreas, all-trans retinol, and adenosine were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Procollagen Type I C-peptide (PIP) EIA kit was purchased from Takara Bio Inc. (Kusatsu, Shiga, Japan). Human Total MMP-1 DuoSet ELISA kit was obtained from R&D Systems (Minneapolis, MN, USA).
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9

Elastase Inhibition Assay Protocol

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Inhibition of elastase was based on described corresponding assays [45 (link)], with following modifications: elastase from porcine pancreas (Sigma-Aldrich, St. Louis, MO, USA) was dissolved in 0.2 M buffer solution (Tris-HCl, Sigma-Aldrich, St. Louis, MO, USA). In addition, inhibitor (10 µL) or fraction dilution (10 µL), enzyme (10 µL) and buffer solution (150 µL) were added to the wells and the plate was preincubated for 15 min at 25 °C, after which substrate (30 µL, N-succinyl-Ala-Ala-Ala-p-nitroanilide, Sigma-Aldrich, St. Louis, MO, USA) was added and the plate was incubated at 25 °C. The absorbance was read at 405 nm after 10 min. Six concentrations (5, 12.5, 25, 37.5, 50, and 125 µg·mL−1) of the inhibitor elastatinal (Sigma-Aldrich, St. Louis, MO, USA) in 1% DMSO were used as positive control.
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10

Peanut Shell Bioactive Compounds Extraction

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Peanuts were grown on Buyeo 153 farm (Buyeo, Chungcheongnam-do, Korea). The kernels of the peanuts were removed and only the shells were recovered. Peanut shells (PSs) were washed with DW and dried at 110 °C. After that, PSs were prepared with a size of less than 90 μm using a test sieve and used as biomass. Ethanol (EtOH, 94.50%), methanol (MeOH, 99.9%), acetone (Ace, 99.7%) and ethyl acetate (EA, 99.9%) were purchased from Samchun Chemical (Gangnam, Seoul, Republic of Korea). Folin–Ciocalteu reagent, sodium carbonate (Na2CO3), luteolin, gallic acid, sodium nitrite (NaNO2), 2,4,6-tripyridyl-S-triazine (TPTZ), iron (II) sulfate (FeSO4), iron (III) chloride (FeCl3), sodium acetate trihydrate (CH3CO2Na·3H2O), 1,1-diphenyl-2-picryl-hydrazyl (DPPH), 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), N-Succinyl-Ala-Ala-Ala-p-nitroanilide and elastase from porcine pancreas were obtained from Sigma-Aldrich (St. Louis, MO, USA). Aluminum chloride (AlCl3), calcium carbonate (CaCO3), hexane (95%) and sulfuric acid (H2SO4) were purchased from Duksan Pure Chemical (Ansan-si, Gyeonggi-do, Republic of Korea). All reagents used in this study were analytical grade.
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