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Q tof ultima api mass spectrometer

Manufactured by Waters Corporation
Sourced in United States, Japan

The Q-TOF Ultima API mass spectrometer is a high-resolution, quadrupole time-of-flight (Q-TOF) mass spectrometer designed for accurate mass measurement and structural elucidation of small molecules. It features a dual-electrospray ionization (ESI) source and a quadrupole mass analyzer coupled to a high-resolution time-of-flight mass analyzer.

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3 protocols using q tof ultima api mass spectrometer

1

Proteomic Analysis of Thyroid Lesions

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Proteins in PTC and goitre tissues were resolved by two-dimensional gel electrophoresis (2D) (Roessler et al, 2006 (link)). Two gels were performed for both the papillary carcinoma and goitre proteins. One was stained with Comassie Brilliant Blue G-250 dye (Bio-Rad, Hercules, CA, USA) and the other was transferred onto a nitrocellulose membrane (GE) for western blot with scFV-C1 antibody, using the HRP-conjugated rat anti-HA (Roche Applied Science). The corresponding spots that scFv antibody recognised in the western blot were excised from the gels and subjected to trypsin digestion (Wilm et al, 1996 (link)), followed by liquid chromatography mass spectrometry (LC-MS/MS) to allow identification.
Peptides were identified by on-line chromatography using a Cap-LC coupled to a Q-TOF Ultima API mass spectrometer (Waters, Milford, MA, USA). The resulting fragmented spectra were processed using the ProteinLynx 4.0 software (Waters), and we used the MASCOT MS/MS Ion Search system to blast the sequences against the SwissProt and NCBInr databases. According to the MASCOT probability method, only significant (P<0.05) hits were accepted.
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2

Native MS and IM-MS Analysis of Proteins

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Native IM-MS of βLG and TTR was performed using a Waters Synapt G2S traveling-wave IM mass spectrometer, and native MS of T80 was performed on a Waters Synapt G1 traveling-wave IM mass spectrometer. Samples were ionized using offline borosilicate emitters (Thermo). The capillary voltage was 1.2 to 1.5 kV, and the cone voltage was 20 V. The source temperature was 25 °C, and the source pressure was 3.4 mbar. Wave height and wave velocity were 35 V and 700 m/s in the IM spectrometry cell and 10 V and 248 m/s in the transfer cell. The IM spectrometry gas was nitrogen with a flow of 50 ml/min, and the trap gas was argon with a flow of 10 ml/min. Mass spectra were processed using MassLynx 4.1 (Waters). IM-MS data were analyzed using PULSAR (version 2.0, 2018) (28 (link)). Drift tube CCS values for βLG and TTR were used to calibrate T-wave data. Theoretical CCS values were computed using projection approximation in IMPACT (29 (link)) and scaled with the empirical factor of 1.14 (30 (link)). Native MS of CTC was performed on a Q-ToF Ultima API mass spectrometer (Waters) equipped with a Z-spray source using offline borosilicate emitters (Thermo). The source temperature was 30 °C, the capillary voltage was 1.5 kV, and the cone voltage was 20 V, respectively. The source pressure was maintained at 7 mbar. The mass spectrometer was operated in single-reflector mode.
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3

Characterization of Organic Compounds

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The following instruments were used to obtain physical data: a JEOL ECA-500 (1H-NMR: 500 MHz, 13C-NMR: 125 MHz) spectrometer (JEOL Ltd., Tokyo, Japan) for 1H and 13C NMR data using tetramethylsilane or residual solvent peak as internal standards; a JASCO FT/IR-5300 infrared spectrometer (JASCO Corp., Tokyo, Japan) for IR spectra; a Waters Q-Tof Ultima API mass spectrometer (Waters Corp., Milford, MA, USA) for ESI-TOF MS. Silica gel (40–100 μm, Kanto Chemical Co. Inc., Tokyo, Japan ) and pre-coated thin layer chromatography (TLC) plates (Merck, 60F254, Darmstadt, Germany) were used for column chromatography and TLC. Spots on TLC plates were detected by spraying acidic p-anisaldehyde solution (p-anisaldehyde: 25 mL, c-H2SO4: 25 mL, AcOH: 5 mL, EtOH: 425 mL) or phosphomolybdic acid solution (phosphomolybdic acid: 25 g, EtOH: 500 mL) with subsequent heating. Unless otherwise noted, all reactions were performed under N2 atmosphere. Compounds 7, 8, and 9 were synthesized according to our previous report [13 (link)].
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