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3 protocols using amylose resin

1

Purification and Biochemical Characterization of Sirtuins

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All restriction enzymes, DNA-modifying enzymes, and DNA ladders were obtained from New England Biolabs. Plasmid pETM-41 and TEV protease were kindly provided by Dr Amit Sharma (ICGEB, New Delhi). Protein markers were obtained from Thermo Fisher Scientific (USA). nicotinamide Adenine Dinucleotide [Adenylate-32P] (800Ci/mmol) was purchased from American Radiolabeled Chemicals (USA). Ni2+-NTA agarose and amylose resin were purchased from Qiagen and New England Biolabs, respectively. Sirtinol, nicotinamide, cambinol, and Ex-527 were obtained from Sigma-Aldrich (USA). SIRT1 Fluorometric Drug Discovery Kit and SIRT5 Fluorometric Drug Discovery Kit were procured from Enzo Life Sciences (USA). Other materials used in this study were of analytical grade and were commercially available.
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2

Recombinant Protein Expression and Purification in E. coli

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Each constructed vector was transformed into E. coli BL21-Codon Plus (DE3)-RIL cells (Agilent Technologies, Santa Clara, CA, USA) by heat-shock transformation. The culture was grown in a shake flask containing Luria broth plus ampicillin or kanamycin and chloramphenicol (LBAm+/Cp+ for pMAL-HR1 and LBKm+/Cp+ for pET-ALP-HR2) at 37°C. The LB culture was grown in flasks at 37°C to an optical density of 0.6 at 600 nm, and the expression of each protein was induced by the addition of isopropyl β-D-thiogalactopyranoside (1.0 mM for MBP-HR1 and 0.3 mM for ALP-HR2). MBP-HR1 was expressed for 4 h at 37°C. ALP-HR2 was expressed for 10 h at 25°C. After culturing, the cells were harvested by centrifugation, and the obtained cell pellets were stored at −80°C until use. For purification of MBP-HR1 and ALP-HR2, each cell pellet was resuspended in 10 mM Tris pH 8.0 and lysed by sonication. The cell lysates were separated into supernatant and inclusion body fractions by centrifugation. Each fusion protein was confirmed to be present in the supernatant fraction. MBP-HR1 and ALP-HR2 were purified using Amylose Resin (NEB) and Ni-NTA Agarose (QIAGEN, Hilden, Germany), respectively.
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3

Recombinant expression of Aβ42 peptide

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The expression vector pMAL-c2x was purchased from Novagen Inc. (Darmstadt, Germany). E. coli JM109 was used as the host for plasmid construction and molecular cloning of the candidate gene. E. coli BL21 (DE3) was used as the host for heterologous expression of the candidate gene. Both of them were obtained from Invitrogen Inc. (Carlsbad, USA) and grown at 37 °C in Luria-Bertani (LB) medium (10 g L−1 tryptone; 5 g L−1 yeast extract; 10 g L−1 NaCl and 15 g L−1 agar; pH 7.0). Restriction enzymes and T4 DNA ligase were purchased from Takara Inc. (Dalian, China) and used with the provided buffer according to supplier's recommendations. QIAprep Spin MiniPrep Kit and amylose resin were purchased from Qiagen Inc. (Hilden, Germany). Aβ42 gene was codon-optimized and synthesized by GENEWIZ Inc. (Suzhou, China). Primers and sequence analyses of the constructions were performed by BGI Inc. (Shenzhen, China). Commercial Aβ42 (>95%) was purchased from GL Biochem Ltd. (Shanghai, China) Dulbecco's modified Eagle's medium and fetal bovine serum were purchased from Gibco Invitrogen Inc. (Grand Island, NY, USA). The PC12 cell line was obtained from National Infrastructure of Cell Line Resources of China. Unless noted, all other reagents and chemicals were of the highest purity available from local sources.
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