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Complete minitab

Manufactured by Roche
Sourced in United Kingdom, Canada

Complete Minitab is a statistical analysis software package designed for data analysis, process improvement, and quality management. It provides a comprehensive set of tools for data exploration, hypothesis testing, regression analysis, and quality control charting.

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5 protocols using complete minitab

1

Quantifying DARPP-32 Phosphorylation in Striatal Slices

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To evaluate the phosphorylation state of DARPP-32 in our experimental conditions, striatal slices were incubated with Roscovitine 20 μM or vehicle for 10 min in artificial brain fluid. After incubation, striatal tissue was homogenized in lysis buffer containing 26 mM Tris–HCl, 1% (v/v) Triton X-100, 1.3 M glycerol and 130 mM NaCl, with the protein phosphatase inhibitor cocktail Complete mini tab (Roche). The samples were recollected and centrifuged for 5 min at 4500 rpm; supernatants were recollected and store at −70°C. Protein quantification was made using the Bradford method and 80 μg of protein was loaded in 10% (w/v) PAGE for electrophoresis. Proteins were transferred to PVDF membranes and incubated with primary antibodies against pDARPP-32 Trh34 (1:1000), pDARPP-32 Trh75 (1:1000) and Actin (1:1000) for 12–20 h at 4°C, and with secondary antibodies (1:2000) with HRP for 2 h at room temperature. Protein detection was performed through the use of luminol with a chemiluminescence method (Millipore); images were acquired via a scan (HP Scanjet G2410) and analyzed with Image J software for the evaluation of densitometry.
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2

Artery Protein Extraction and Analysis

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Arteries were homogenized in Tris‐TX‐100 buffer (25 mmol/L Tris pH 7.4, 5 mmol/L EDTA, 0.2% Triton X‐100, protease inhibitors [Complete mini‐tab; Roche, Welwyn Garden City, UK], 1 mmol/L sodium orthovanadate, 200 μmol/L sodium pyrophosphate) on ice. The homogenate was incubated at 4°C for 30 min, centrifuged at 800g for 10 min at 4°C to pellet nuclei and cell debris and the protein concentration of the supernatant determined by Bradford assay. The sample volume was adjusted with Tris‐TX‐100 buffer to a final concentration of 1 mg/mL. An aliquot was removed for sphingomyelinase assay and to the remainder Laemmli sample buffer was added and the sample stored at −20°C.
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3

Extraction and Quantification of Cellular Proteins

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To isolate cell lysates, culture medium was aspirated, and cells were washed with ice‐cold PBS. Cell lysis buffer (150 mM NaCl, 20 mM Tris (pH 7.5), 1mM EDTA, 1mM EGTA, 1% Triton X‐100, protease inhibitor cocktail: Complete Minitab, and phosphatase inhibitor cocktail: Complete PhoStop (Roche, Laval, Canada)) was then added to cells, and they were frozen at −20°C. Total protein was quantified using the Precision Red Protein Assay (Cytoskeleton, Denver, CO), and protein concentration was normalized between samples. Western blots were performed on normalized protein extracts from Caco‐2 intestinal epithelial cells. Membranes were probed with the appropriate primary antibody (anti‐RAC1, BD Bioscience #610651; anti‐β‐actin, Abcam #mAbcam‐8226) and corresponding horseradish peroxidase (HRP)‐conjugated secondary antibody. Membranes were imaged using the MicroChemi Bio‐Imaging system.
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4

Western Blot Analysis of hERG Expression

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Cells were lysed 48 h post-transfection using buffer containing (in mM): 150 Tris-NaCl, 25 Tris HCl, 10 Na-EGTA, 20 Na-EDTA, 5 glucose, and supplemented with 1% Triton X-100, 50 µg/ml 1,10 phenathroline, 0.7 µg/ml pepstatin A, 1.56 µg/ml benzamidine and 1x Complete Minitab (Roche Applied Science). Solution was sonicated, incubated on ice for 30 min, and centrifuged for 10 min at 13,000 rpm at 4°C. Protein concentration of supernatant was assessed using a BIORAD protein Assay. 30 µg of protein per lane was electrophoresed on a 7.5% SDS-polyacrylamide gel and then transferred onto PVDF membranes. Membranes were blocked and incubated overnight with 1:2000 anti β-actin (ab8226, abCam), and either anti-hERG (CT) (pan) (ALX-215-049-R100, Enzo Life Sciences) or anti-Ribosomal Protein L13A (C-11) (sc-390131, Santa Cruz Biotechnology). Membranes were washed and then incubated with 1:1000 dilutions of secondary antibody Alexa Fluor® 647 Goat Anti-Rabbit IgG A-21245 (Life Technologies) for 1 hour and imaged using a Chemidoc-MP Imaging System (BIORAD). Individual values were calculated from the mean of three parallel experiments completed on the same day and under identical conditions (i.e. n = 1). Protein values were then paired with experiments completed on the same day to increase statistical power.
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5

IGF-1 and EGF Signaling Regulation

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Cells were serum-starved for either 2 hrs or overnight in media containing 0.1% BSA and then stimulated with IGF-1 (100 ng/ml) or hEGF (50ng/ml) for the time periods indicated in the Figures. To inhibit internalization, cells were incubated with 10ug/ml chlorpromazine for 1 hour prior to and during stimulation. Cells were infected with lentiviruses containing shBECN1-resistant Flag-BECN1 for over-expression and rescue experiments and stimulated 48hrs post-infection. Cells were extracted at 4°C for 10 minutes in a 20 mM Tris buffer, pH 7.4, containing 0.15 M NaCl, 1% NP-40, 10% Glycerol, 1 mM sodium orthovanadate, 10 mM NaF and protease inhibitors (Complete Mini Tab; Roche). Cell extracts were immunoblotted as described previously48 (link). Bands were detected by chemiluminescence using a ChemiDoc XRS+ system (BioRad Laboratories) and band intensities were quantified by densitometry using Image Lab (Beta 1) (Bio-Rad Laboratories). PI3P lipid levels were measured using the PI3P Mass ELISA Kit (Catalog # K-3300) according to manufacturer's instructions.
For autophagic flux assay, MDA-MB-231 cells expressing shGFP or shATG5 were incubated in either RPMI 1640 supplemented with 10% fetal bovine serum or Hank's Balanced Salt Solution (GIBCO®), with and without 25 μM Chloroquine diphosphate (Catalog # C6628; SIGMA) for 4 hours.
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