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7 protocols using ab134113

1

Colocalization analysis of NPC1 and LAMP2

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For confocal microscopic co-localization studies, the cells were seeded onto BD Falcon Cultures Slides (Becton Dickinson). Next day the fibroblasts were washed, fixed with ice-cold methanol, blocked with 5% FBS in PBS and co-labelled rabbit monoclonal anti-NPC1 (1:100, ab134113, Abcam) and mouse monoclonal anti-LAMP2 (1:500, H4B4, Iowa Hybridoma Bank) antibodies at 4 °C overnight. Secondary antibodies were donkey anti-IgG anti-mouse alexafluor555 or anti-rabbit alexafluor488 conjugates (Pierce) diluted 1:1000. Leica SP8X laser scanning confocal system equipped with 470 nm–670 nm 80 MHz pulse continuum White Light Laser 2 and HC PL APO 63x/1.40 OIL CS2 (W.D. 0.14 mm) objective was used to image the samples. Image acquisition conditions were: excitation at 496 nm or 553 nm, one voxel 42.2 × 42.2 × 130 nm, 7 Z-steps (fulfilling Nyquist sampling theorem), Hybrid detectors at 503–553 nm or 566–650 nm. Acquired confocal images were deconvolved using theoretical point spread function in Huygens Professional software (Scientific Volume Imaging - SVI, Hilversum, The Netherlands). Overlay colocalization maps and Object Pearson’s coefficients were computed using Huscript (SVI), the grayscale maps were converted to colour coding look-up table (LUT) in Fiji/ImageJ software (NIH, Bethesda).
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2

Western Blot Analysis of NPC1 Protein

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Tissues were homogenized (Ultra-Turrax TP, IKA Labortechnik, Wasserburg, Germany) on ice in 300 µl of RIPA lysis buffer (Thermo) per 100 mg of tissue with 1× protease inhibitor cocktail (Thermo) and incubated for 30 min. Lysates were centrifuged at 14 000g, 4°C for 20 min and overall protein concentrations of the supernatant was determined by Pierce BCA Protein Assay (Life Technologies). Samples were incubated at 37°C for 30 min in 1× LDS sample buffer (Life Technologies) and 1× sample reducing agent (Life Technologies), after which 40 µg of protein were loaded per well in a NuPAGE Bis–Tris 4–12% polyacrylamide gel for protein separation via SDS-PAGE electrophoresis. Proteins were transferred to PDVF membrane at 400 mA for 1 h and membrane was blocked for 1 h at 4°C with 5% BSA in TBS + 3% Tween 20. Membranes were subsequently incubated overnight at 4°C with primary antibodies for NPC1 (1:10 000, ab134113, Abcam) and β-tubulin (1:2000, ab6161, Abcam) with 3% BSA in TBS + 3% Tween 20. After 3 washes in TBS, antibody staining was revealed using HRP-conjugated goat anti-rabbit IgG (1:2000, ab6721, Abcam) and goat anti-rat IgG (1:10 000, ab97057, Abcam) incubated for 2 h at RT in TBS + 3% Tween 20 with 3% BSA. Blots were developed with ECL system (SuperSignal West Pico, Life Technologies) and imaged using a Genegnome imager (Syngene, Cambridge, UK).
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3

Western Blot Analysis of Lipid Metabolism

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Cells grown to near confluence on 6 cm-dishes were lysed, separated by SDS gel electrophoresis and blotted onto polyvinylidene difluoride membranes. Antibodies directed against Abca1 (ab18180), LDL receptor (ab30532), HMG-CoA reductase (ab174830), SREBP-2 active fragment (ab30682), NPC1 (ab134113), and APP (ab32136) were obtained from Abcam (Cambridge, UK). Antibodies to AMPKα (#2603 S) and phospho-Thr172-AMPKα (#2535 S) were from Cell Signaling Technology (Danvers, MA, USA), while anti-β-actin (A5441) was from Sigma-Aldrich Chemie GmbH (Taufkirchen, Germany). HRP-conjugated secondary antibodies were from GE Healthcare (Freiburg, Germany). The enhanced chemiluminescence system was from Millipore Corporation (Billerica, MA, USA).
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4

Western Blot Analysis of NPC1 Protein

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The samples were sonicated and the protein content was determined by Direct Detect spectrometer (Merck Millipore). Samples were mixed with 6X SDS non-reducing sample buffer (0.35 M Tris, pH 6.8, 10% SDS, 30% glycerol, 0.012% bromophenol blue) and non-boiled samples (8 μg of whole cell lysates) were resolved by 10% SDS-PAGE electrophoresis under non-reducing conditions. Protein samples were transferred onto Immobilon-P PVDF membrane (Merck Millipore) using a semi-dry electroblotter (Biotec-Fischer). Reversible Ponceau S was applied to check equal loading of gels. Immunodetection of NPC1 and beta-actin proteins was performed using a rabbit monoclonal anti-NPC1 antibody (ab134113, Abcam) at a 1:3000 dilution, and a mouse monoclonal anti-beta-actin antibody (mAbcam 8226, Abcam) at a 1:4000 dilution, respectively. Detection was performed by chemiluminiscence using SuperSignal West Femto Maximum Sensitivity Substrate (Thermo Scientific). Image capture was carried out using ChemiGeniusQ analysis system and GeneSnap software (Syngene, Cambridge, UK). Images were analysed using GeneTools software package (Syngene).
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5

Western Blot Analysis of Liver Proteins

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Frozen mouse liver was homogenized with a Mikro-Dismembrator S (B. Braun Biotech International) in lysis buffer (50 mM Tris-HCl pH 7.4, 150 mM NaCl, 50 mM NaF, 20 mM Na4P2O7, 2 mM EDTA, 2 mM EGTA, 2 mM DTT, 200 µM Na3VO4, 40 mM β-glycerolphosphate, 10% glycerol, 1% Triton X-100), separated by SDS gel electrophoresis and blotted onto polyvinylidene difluoride membranes. SGPL1 was probed with antibody HPA021125 from Atlas Antibodies (Bromma, Sweden). Amyloid precursor protein (ab32136), fatty acid synthase (ab128856), HMG-CoA reductase (ab174830), liver X receptor (ab176323), LDL receptor (ab30532), and NPC-1 (ab134113) antibodies were from Abcam (Cambridge, UK). For PPARγ, the antibody sc-7196 from Santa Cruz Biotechnology (Dallas, TX, USA) was used. Anti-β-actin (#A5441) was from Sigma Aldrich Chemie GmbH. Horseradish peroxidase-conjugated secondary antibodies were from GE Healthcare (Freiburg, Germany), and the enhanced chemiluminescence system was from Merck Millipore (Darmstadt, Germany).
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6

Quantifying Protein Expression in Cerebrum and Liver

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Protein levels from cerebrum and liver WB homogenates were quantified using the BCA Protein Assay kit from Pierce (23227). Equal amounts of protein (80 μg for liver and 120 μg for cerebrum) were run on 4–12% Bis-Tris SDS-polyacrylamide gels (NW04120BOX; Thermo Fisher Scientific) to achieve separation of protein bands. After transferring to a nitrocellulose membrane (IB301002; Life Technologies) and blocking for 1 h in TBS-Tween + LI-COR Odyssey Blocking Buffer (927-40000), samples were incubated overnight with two antibodies: rabbit anti-NPC1 (ab 134113; 1:1,000; Abcam) and the loading control mouse anti-α-tubulin (T9026; 1:1,000; Millipore). The Odyssey donkey anti-rabbit 680 (926-68073; 1:5,000; LI-COR Biosciences) and the Odyssey donkey anti-mouse 800 (926-32212; 1:5,000; LI-COR Biosciences) were used as secondary antibodies. The LI-COR Odyssey Imaging System was used to capture results.
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7

Antiviral Compound Screening Library

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TargetMol's small compound library subsets (anti-virus compound library, anti-infection compound library, nature compound library, plant-sourced compound library, anti-inflammation library, and inhibitors library) were used for virtual screening. Small molecules selected from docking procedure were purchased from Topscience Co., Ltd. (Shanghai, China). Tetrandrine (TET) and efavirenz (EFV) were maintained in the Institute of Medicinal Biotechnology, Beijing, China. The purity of all tested compounds is more than 95%. The following antibodies were used: mouse anti-HIS (TA-02, ZSGB-Bio), mouse anti-FLAG (8146S, CST), rabbit anti-FLAG (B1020, Biodragon), mouse anti-NPC1 (ab134113, Abcam), mouse anti-P24 (ab9071, Abcam), rabbit anti-P24 (produced by our own lab), mouse anti-LAMP1 (ab24170, Abcam), mouse anti-β-actin monoclonal antibody (ab6276, Abcam), goat anti-rabbit secondary antibody (ZB-2301, Beijing Zhongshan jinqiao Biotechnology), and goat anti-mouse secondary antibody (ZB-2305, Beijing Zhongshan Jinqiao Biotechnology). Alexa Fluor-conjugated secondary antibodies were purchased from Life Technologies.
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