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Paraformaldehyde 4

Manufactured by Thermo Fisher Scientific
Sourced in France, United States

Paraformaldehyde 4% is a fixative solution used in laboratory settings. It is a formulation of formaldehyde and water, designed to preserve and stabilize biological samples for various analytical and research applications.

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7 protocols using paraformaldehyde 4

1

Quantifying Multinucleation via Immunofluorescence

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For quantification of multinucleation, cells were fixed using paraformaldehyde 4% (Alfa Aesar) for 20 min. Coverslips were then washed using TBS. Cells were permeabilized and blocked for ≥1 h in TBS containing 0.02% saponin and 2% BSA (TBS-saponin-BSA). F-actin was stained using 1/100 Texas red-X Phalloidin (T7471; Invitrogen) or 1/50 Alexa Fluor 647 Phalloidin (A22287; Invitrogen). dPLCXD-V5 was revealed by immunostaining using a monoclonal anti-V5 antibody (1/1,000; R960-25; Invitrogen) and a goat Alexa Fluor 488–conjugated secondary antibody anti-mouse (1/400; A11017; Invitrogen). Coverslips were mounted using Vectashield with Dapi (Vector Laboratories). To assess multinucleation, ≥300 cells (n > 300) were counted manually per condition per N individual experiment unless otherwise specified.
Representative images were treated using SoftWorx software (GE Healthcare), ImageJ software (National Institutes of Health), and Photoshop (Adobe).
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2

Immunofluorescent Analysis of DNA Damage

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Sodium chromate, Triton X-100, demecolcine and potassium chloride (KCl) were purchased from Sigma Chemical (St. Louis, MO). Giemsa stain was purchased from Ricca Chemical Company. (Arlington, TX). Crystal violet, sodium dodecyl sulfate (SDS), and acetic acid were purchased from J.T. Baker (Phillipsburg, NJ). Nitric acid and methanol were purchased from BDH Chemicals (Radnor, PA). Gurr’s buffer, Keratinocyte-SFM, and 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Invitrogen Corporation (Grand Island, NY). Tissue culture dishes, flasks and plasticware were purchased from BD (Franklin Lakes, NJ). Urothelial cell medium, trypsin/EDTA and trypsin neutralizing solution were purchased from ScienCell Research Laboratories (Carlsbad, CA). Penicillin/streptomycin was purchased from Mediatech (Manassas, VA). Paraformaldehyde 4% was purchased from Alfa Aesar (Ward Hill, MA). Phospho-histone H2A.X (Ser139) antibody was purchased from Cell Signaling (Beverly, MA). AlexaFluor 488-conjugated goat anti-rabbit IgG secondary antibody was purchased from ThermoScientific (Rockford, IL).
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3

Drosophila S2 Cell Immunostaining Protocol

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Drosophila S2 cells were plated on Concanavalin A (0.5 μg/μl; C2010; Sigma-Aldrich)–coated coverslips for 3 h. Then cells were fixed using paraformaldehyde 4% (Alfa Aesar) for 20 min and washed using TBS. Cells were permeabilized and blocked for ≥1 h in TBS containing 0.02% saponin and 2% BSA (TBS-saponin-BSA). Cells were incubated with primary antibody diluted in TBS-saponin-BSA overnight at RT, washed three times in TBS-saponin-BSA, and incubated with secondary antibodies diluted in TBS-saponin-BSA for 1 h at RT. Cells were washed two times in TBS-saponin-BSA and a last time in TBS before being mounted in Vectashield medium with DAPI (Vector Laboratories). Images were taken using a Zeiss confocal microscope LSM880 with non-linear optics with a 63×/1.4 Plan-Apochromat, DIC objective. Images were treated using ZEN lite software (Zeiss), ImageJ software, and Photoshop.
Immunostaining was performed using a mouse anti-Rab7 antibody (1/200; DSHB), a monoclonal anti-V5 (1/1,000; R960-25; Invitrogen) or a rabbit anti-V5 (1/500; Ab9116; Abcam), a goat Alexa Fluor 488–conjugated secondary anti-mouse antibody (1/400; A11017; Invitrogen), and a goat Texas red–conjugated secondary anti-mouse antibody (1/200; T862; Invitrogen).
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4

Isolation and Characterization of Monocyte-Derived Macrophages

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Frozen peripheral blood mononuclear cells (PBMCs) from healthy donors and patients were thawed and CD14+ cells selected using magnetic beads (Miltenyi). 2 x 105 cells/ well in a 24 well plate were seeded on 10ug/ml fibronectin-coated cover slips (R&D systems) in 500ul 20ng/ml macrophage colony stimulating factor (MCSF, Gibco) for 6 days to obtain monocyte-derived macrophages (MDMs). Cells were fixed with paraformaldehyde 4% (Thermo Fisher Scientific) for 10 minutes on ice followed by 8% for 20 minutes at room temperature, permeabilised with 0.1% triton (Sigma) for 5 minutes at room temperature and non-specific binding reduced by blocking with 5% BSA/PBS for 1 hour at room temperature. Cells were incubated with primary anti-vinculin antibody (Sigma 1:200) for 1 hour at room temperature, washed twice with PBS and incubated with secondary antibody conjugated to Alexa Fluor 488 (1:500 Life Technologies) and phalloidin-conjugated to Alexa Fluor 633 (1:200 Thermo Fisher Scientific) for one hour at room temperature. Cells were washed twice with PBS and cover slips mounted onto slides using mounting solution with DAPI for nuclear staining (ProLong Diamond Antifade Mountant with DAPI, Life Technologies) overnight. Slides were imaged using Zeiss 710 confocal microscope at 63x magnification and podosome analysis was carried out on at least 100 cells per sample from 10 fields of view.
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5

Isolation and Characterization of Monocyte-Derived Macrophages

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Frozen peripheral blood mononuclear cells (PBMCs) from healthy donors and patients were thawed and CD14+ cells selected using magnetic beads (Miltenyi). 2 x 105 cells/ well in a 24 well plate were seeded on 10ug/ml fibronectin-coated cover slips (R&D systems) in 500ul 20ng/ml macrophage colony stimulating factor (MCSF, Gibco) for 6 days to obtain monocyte-derived macrophages (MDMs). Cells were fixed with paraformaldehyde 4% (Thermo Fisher Scientific) for 10 minutes on ice followed by 8% for 20 minutes at room temperature, permeabilised with 0.1% triton (Sigma) for 5 minutes at room temperature and non-specific binding reduced by blocking with 5% BSA/PBS for 1 hour at room temperature. Cells were incubated with primary anti-vinculin antibody (Sigma 1:200) for 1 hour at room temperature, washed twice with PBS and incubated with secondary antibody conjugated to Alexa Fluor 488 (1:500 Life Technologies) and phalloidin-conjugated to Alexa Fluor 633 (1:200 Thermo Fisher Scientific) for one hour at room temperature. Cells were washed twice with PBS and cover slips mounted onto slides using mounting solution with DAPI for nuclear staining (ProLong Diamond Antifade Mountant with DAPI, Life Technologies) overnight. Slides were imaged using Zeiss 710 confocal microscope at 63x magnification and podosome analysis was carried out on at least 100 cells per sample from 10 fields of view.
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6

Macrophage Polarization and Morphology

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After their polarization and fixation with paraformaldehyde 4% (Thermo Fisher Scientific, Illkirch, France), macrophages were labelled with hematoxylin (Sigma-Aldrich). Cells were observed with the Nikon Eclipse E600 optical microscope 7 days after polarization for optimal morphologic features.
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7

Fibroblast Adhesion on ZnO-NP Scaffolds

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Following the determination of the optimal cell-compatible concentration of ZnO-NPs, adherence of human fibroblast cells to the membrane was observed using SEM.
Scaffolds were placed into 48-well plates, and 50 × 10 4 cells were seeded onto the membranes and cultured for 2 days. Membranes were washed 3 times with phosphatebuffered saline (PBS) (Merck Millipore, Burlington, USA; Millipore Sigma ™ 65074L). Then, paraformaldehyde 4% (Thermo Fisher Scientific, Waltham, USA; MDL No. MFCD00133991) was added for 90 min. The samples were dehydrated in ascending concentrations of ethanol (60%, 70%, 80%, 90%, and 96%) for 10 min in each. Samples were sputtered with gold and studied using SEM.
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