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4 protocols using leupeptin

1

Quantifying Aβ42 Degradation in Microglia

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Primary microglia were transfected with ADV constructs: vehicle (Control), shSELK, or SELK-OE. Post-transfection, cells were treated with lysosomal enzyme inhibitors (pepstatin A at 10 μM, leupeptin at 100 μM, and E−64d at 50 μM) (HY–P0018, HY-18234, and HY-100229, respectively; MedChemExpress, Monmouth Junction, NJ, USA) or 40 μM chloroquine (C6628; Sigma-Aldrich, Merck) for 30 min, followed by incubation with 500 nM Aβ42 oligomer for 3 h. Post-incubation, cells were trypsinized and washed twice with PBS. Cell lysates were prepared using 5 M guanidine in 50 mM Tris-HCl buffer (pH 8.0) and centrifuged at 12,000×g for 25 min at 4 °C. The supernatants were collected for Aβ42 quantification using ELISA. The degraded Aβ42 amounts were determined by subtracting the cell-associated Aβ levels without inhibitors from those with inhibitors.
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2

Cysteine Protease Inhibitor Screening

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Boceprevir, Telaprevir, Narlaprevir, Grazoprevir, Asunaprevir, Simeprevir, Leupeptin, VBY-825, Balicatib, CA-074, Calpeptin, E-64, E-64c, JPM-OEt, LY-3000328, Odanacatib, CPI (Cysteine Protease Inhibitor), Aloxistatin, Cinanserin, MDL-28170, MG-101, ONO-5334, (±)Alliin, and Z-LVG-CHN2 were purchased from MedChemExpress, LLC. (www.medchemexpress.com). DiscoveryProbe™ FDA-approved Drug Library (23 plates of 96-well, 1971 compounds) were purchased from APExBIO (https://www.apexbt.com).
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3

Dedifferentiation of Vascular Smooth Muscle Cells

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A7r5 cells (Rat thoracic artery smooth muscle cells) were purchased from Shanghai Zhong Qiao Xin Zhou Biotechnology Co., Ltd. (Item No: ZQ0139). Cells were cultured in DMEM (Hyclone, United States) containing 10% fetal bovine serum (FBS) (Gibco, United States) and 1% penicillin/streptomycin (Gibco, United States). Cells were incubated under 5% CO2 at 37°C in humidified incubators. To induce dedifferentiation of VSMCs in vitro, A7r5 cells were starved with serum-free medium for 48 h, and were then stimulated with 10% FBS serum as previously described (Zhang et al., 2020b (link)). The cells were harvested at 0, 24, 48, and 72 h for subsequent detection. The A7r5 cells were infected with adenovirus expressing ERα (Ad-ERα), adenovirus expressing OMI (Ad-OMI) or the negative control adenovirus (Ad-NC) in normal culture medium for 48 h. After 48 h or 72 h of siRNA/virus treatment, RNA or protein was extracted for further assays. The siRNA against OMI and the negative control siRNA transfection was performed using Lipofectamine RNA interference (RNAi) max reagent (Thermo Fisher Scientific, United States) according to the manufacturer’s protocol. For inhibitor treatment, 3-MA (10 mM), FCCP (5 μM), MG132 (5 μM) and leupeptin (50 μM) were purchased from MedChemExpress Co., Ltd. (New Jersey, United States).
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4

Regulation of IL-13 Signaling Pathway

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Recombinant human IL-13 was purchased from PeproTech (Cranbury, NJ, USA). RSL3, Erastin, AS1517499, MG-132, Homoharringtonine (HHT), and Leupeptin were obtained from Med Chem Express (MCE, NJ, USA). Dimethyl sulfoxide (DMSO) and OVA were purchased from Sigma Co., Ltd. (Louis, MO, USA). Western blot experiments were performed using the following antibodies: anti-SOCS1 (#ab280886), anti-SLC7A11 (#ab175186), anti-GPX4 (#ab125066), anti-STAT6 (#ab282107), anti-STAT6 (phospho Y641) (#ab263947), anti-p53 (#ab32389), and anti-NRF2 (#ab62352) from Abcam (Cambridge, MA, USA), anti-Ubiquitin (#3936), anti-K48-linkage Specific Polyubiquitin (#8146), anti-HA (#3724), anti-FLAG (#8146), and anti- Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (#5174) from Cell Signaling Technology (CST, Danvers, MA, USA), anti-MUC5AC (#abs126767) from Absin (Shanghai, China), anti-ACCTUB (#sc-23950) and anti-β-actin (#sc-47778) from Santa Cruz. Goat anti-rabbit IgG secondary antibody (#A0208) and goat anti-mouse IgG secondary antibody (#A0216) were obtained from Beyotime.
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