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4 protocols using parthenolide

1

Culturing Human Lung Carcinoma A549 Cells

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Human lung carcinoma type 2 epithelium-like A549 cells, purchased from Riken BioResource Center Cell Bank (Tsukuba, Ibaraki, Japan), were grown in Dulbecco’s modified Eagle’s medium (DMEM; Sigma-Aldrich Life Sciences, MO, USA) with 10% heat-inactivated fetal bovine serum (FBS; GE Healthcare Japanhealth, Tokyo, Japan), 100 U/ml penicillin, 100 mg/ml streptomycin in 10 cm dishes at 37 °C in a humidified atmosphere of 5% CO2. A549 cell line has been characterized as an in vitro model of alveolar type 2 pneumocytes of the human lung because of capacity of secreting lung surfactant-associated glycoproteins [8 (link)].
Reagents were purchased commercially as follows: human IL-1β (Humanzyme, Chicago, IL, USA); human TNF-α (Prospec, Rehovot, Israel), human IFN-γ (Peprotech, NJ, USA); dexamethasone, Fas ligand (super Fas Ligand) (Enzo, PA, USA); RIPA buffer (Thermo Fischer Scientific, Tokyo, Japan); lipopolysaccharide (LPS: E. coli O111:B4, Sigma-Aldrich Life Sciences); rapamycin, parthenolide, SP600125, SB203580, U0123, LY294002, and QVD-OPh (Cayman Chemical, MI, USA).
Antibodies were as follows: anti-iNOS (R&D systems, MN, USA); anti-HO-1 (Enzo); anti-beta actin (MBL, Nagoya, Japan); anti-JNK (Abcam Japan, Tokyo, Japan); anti-cox-2 (BD Japan, Tokyo, Japan); anti-ICAM-1 (Santa Cruz Biotechnology, TX, USA). All of the other antibodies were purchased from CST Japan, Tokyo, Japan.
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2

Synthesis of Parthenolide-Alkyne Probe

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Parthenolide and dimethylaminoParthenolide were obtained from Cayman Chemicals. Synthesis of the Parthenolide-alkyne probe was performed as previously reported (Shin et al., 2017 (link)). All other chemicals were obtained from Millipore-Sigma unless otherwise noted. Antibodies were obtained from Cell Signaling Technologies unless otherwise noted. Mikanokryptin was synthesized as previously described (Hu et al., 2017 ). Synthesis and characterization of cysteine-reactive covalent ligands screened against FAK1 were either described previously or described in Supporting Methods (Bateman et al., 2017 ; Grossman et al., 2017 (link); Roberts et al., 2017b (link)).
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3

Signaling Pathways in Cell Apoptosis

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Rapamycin (ENZO), Torin1 (cayman), AZD6244 (cayman), Parthenolide (cayman), Bortezomib (cayman), prostaglandin E2 (MCE). Antibodies used were Anti‐glutaredoxin‐1 (Abcam, catalogue ab45953); Bim (ENZO, catalogue ADI‐AAP‐330‐E); β‐actin (EASYBIO, catalogue BE0037); Anti‐Glutathione (Santa Cruz, catalogue sc‐52399); p65 (Santa Cruz, catalogue sc‐8008); Bim (Santa Cruz, catalogue sc‐374358). The antibodies below are from Cell Signaling Technology: Tuberin (catalogue 4308); phospho‐Akt (S473) (catalogue 9271); phospho‐S6(Ser235/236) (catalogue 2211); Raptor (catalogue 2280); Rictor (catalogue 2114); cleaved caspase3 (catalogue 9661); cleaved PARP (catalogue 9546); Cox2 (catalogue 12282); phospho‐p65(Ser536) (catalogue 3033); phospho‐ERK1/2(T202/Y204) (catalogue 9101).
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4

TRPV4 Activation and Inhibition Assay

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We used the following compounds: 4α-phorbol 12,13 didecanoate (4α-PDD; TRPV4 activator; Tocris), GSK1016790A, HC067047, and U0126 were purchased from Sigma (St. Louis, MO). RN-1734 (TRPV4 inhibitor) was purchased from Tocris, Parthenolide was purchased from Cayman Chemicals. GSK205, pan TRPV4 blocker was synthesized by the Small Molecule Synthesis Facility at Duke University (37) . Rabbit monoclonal anti-ERK and polyclonal anti-phospho-MEK were obtained from Cell Signaling Technology (Danvers, MA), polyclonal anti-TRPV4 from Abcam (Cambridge, MA), and polyclonal antiactin from Sigma. 4′,6-diamidino-2-phenylindole (DAPI) was obtained from Sigma.
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