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High pure ffpe rna micro kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The High Pure FFPE RNA Micro Kit is a laboratory equipment used for the extraction and purification of RNA from formalin-fixed, paraffin-embedded (FFPE) tissue samples. It is designed to provide high-quality RNA suitable for downstream applications such as RT-qPCR, RNA sequencing, and other molecular biology analyses.

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4 protocols using high pure ffpe rna micro kit

1

Serum and FFPE RNA Isolation

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As previously described (Zhou et al., 2017b (link)), total RNA was isolated from 200 µl serum or exosome samples using mirVana Paris Kit (Ambion, Austin, TX, USA) under the manufacturer’s protocol instruction. We added 5 µl of synthetic C. elegans miR-39 (5nM/L, RiboBio, Guangzhou, China) to each sample after denaturing the solution (Ambion, Austin, TX, USA) for sample-to-sample normalization. We extracted total RNA from FFPE specimens via the High Pure FFPE RNA Micro Kit (Ambion Austin, TX, USA). Then, we dissolved RNA in 100 µl RNAse-free water and stored these RNA samples at −80 °C until use. Nanodrop 2000 Thermo scientific spectrophotometer (NanoDrop Technologies, Wilmington, DE, USA) was used to evaluate the total RNA’s concentration and purity.
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2

Serum RNA Extraction and Quantification

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RNA was isolated from 200μl serum using mirVana Paris Kit (Ambion, Austin, TX, USA) according to the manufacturer’s protocol. To allow for normalization of sample-to-sample variation in RNA extraction procedures, synthetic C. elegans miRNA cel-miR-39 (5 nM/L, 5μl RiboBio, Guangzhou, China) was spiked into each denatured sample after combining the serum sample with denaturing solution (Ambion, Austin, TX, USA). Total RNA was extracted from FFPE specimens using the High Pure FFPE RNA Micro Kit (Ambion, Austin, TX, USA). RNA was eluted with 100μl of RNase-free water and stored at − 80°C for further use. The ultraviolet spectrophotometer was used to evaluate the concentration and purity of the total RNA. The concentration of serum RNA ranged from 15.73 ng/μl to 48.62 ng/μl.
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3

RNA Extraction from Serum and FFPE Samples

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RNA was isolated from 200 μL serum using mirVana Paris Kit (Ambion, Austin, TX) according to the manufacturer's protocol. Total RNA was extracted from FFPE specimens using the High Pure FFPE RNA Micro Kit (Ambion), as previously described. RNA was eluted with 100 μL of RNase‐free water and stored at −80°C for further use. The ultraviolet spectrophotometer was used to evaluate the concentration and purity of the total RNA. The concentration of serum RNA ranged from 15.26 to 50.19 ng/μL.
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4

Serum RNA Isolation and Quantification

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According to the manufacturer’s protocol, RNA was isolated from 200 μl serum using mirVana Paris Kit (Ambion, Austin, TX, U.S.A.). Each sample was mixed with denaturing solution (Ambion, Austin, TX, U.S.A.) and then spiked with 5 μl synthetic Caenorhabditis elegans miRNA cel-miR-39 (5 nM/L, RiboBio, Guangzhou, China) to normalize sample-to-sample variation. Total RNA was extracted from Formalin-Fixed Paraffin-Embedded (FFPE) sample using the High Pure FFPE RNA Micro Kit (Ambion, Austin, TX, U.S.A.). Total RNA was eluted with 100 μl of RNase-free water and stored at −80°C for further experiments. The concentration and purity of RNA were analyzed by the Nanodrop 2000 spectrophotometer (NanoDrop Technologies, Wilmington, DE, U.S.A.) (A260/A280 = 1.8−2, A260/A230 > 1.7).
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