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Serine is a type of amino acid commonly found in various laboratory and research applications. It serves as a fundamental building block for proteins and is involved in various biochemical processes. The exact function and uses of Serine may vary depending on the specific application and research context.

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5 protocols using serine

1

Potassium Ferrate(VI) Preparation and Characterization

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Carbamazepine (CBZ, >98% purity),
sulfadimethoxine (SDM, >98% purity), trimethoprim (TMP, >98%
purity),
all test amino acids (i.e., glycine, alanine, serine, leucine, proline,
phenylalanine, glutamic acid, asparagine, and histidine), phenyl methyl
sulfoxide (PMSO), phenyl methyl sulfone (PMSO2), sodium
thiosulfate, and sodium borate were purchased from Fisher Scientific
(Austin, Texas, USA). A wet chemical procedure was applied to prepare
solid potassium ferrate(VI) (K2FeO4),59 (link) which had a purity of more than 90%. The solid
K2FeO4 was dissolved in a 0.01 M sodium borate
buffer solution. The concentration of Fe(VI) solution was determined
by measuring the absorbance at 510 nm using a 1.0 cm path length and
a molar absorption coefficient of ε510nm = 1150 M–1 cm–1,59 (link) with a UV–visible spectrometer (Thermo Scientific Co., USA).
All reaction solutions were prepared using Milli-Q ultrapure water
(>18 MΩ cm–1 resistivity, Millipore, Milford,
USA).
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2

Cell Culture Conditions for Osteosarcoma and Breast Cancer

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NOS1, Saos2, U2OS, and MNNG were cultured in MEM (Cat # 11095072, GIBCO, Thermo Fisher, Waltham, MA) supplemented with 10% FBS (Cat # S11150, R&D Systems, Bio-Techne, Minneapolis, MN), 1.3% penicillin/streptomycin (Cat # 15140122, GIBCO, Thermo Fisher, Waltham, MA), 286 μM serine (Cat # AAJ6218709, Fisher Scientific, Hampton, NH) and 286 μM glycine (Cat # 67419, Sigma-Aldrich, St. Louis, MO). MG63, MDA-MB-231, and MDA-MB-468 were cultured in DMEM (Cat # 11965084, GIBCO, Thermo Fisher, Waltham, MA) supplemented with 10% FBS and 1.3% penicillin/streptomycin. All cells were maintained at 37°C and 5% CO2 in a humidified atmosphere. All cells were cultured in prophylactic plasmocin (Cat # ant-mpp, InvivoGen, San Diego, CA) and checked regularly for mycoplasma contamination.
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3

Cell Culture Conditions for Osteosarcoma and Breast Cancer

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NOS1, Saos2, U2OS, and MNNG were cultured in MEM (Cat # 11095072, GIBCO, Thermo Fisher, Waltham, MA) supplemented with 10% FBS (Cat # S11150, R&D Systems, Bio-Techne, Minneapolis, MN), 1.3% penicillin/streptomycin (Cat # 15140122, GIBCO, Thermo Fisher, Waltham, MA), 286 μM serine (Cat # AAJ6218709, Fisher Scientific, Hampton, NH) and 286 μM glycine (Cat # 67419, Sigma-Aldrich, St. Louis, MO). MG63, MDA-MB-231, and MDA-MB-468 were cultured in DMEM (Cat # 11965084, GIBCO, Thermo Fisher, Waltham, MA) supplemented with 10% FBS and 1.3% penicillin/streptomycin. All cells were maintained at 37°C and 5% CO2 in a humidified atmosphere. All cells were cultured in prophylactic plasmocin (Cat # ant-mpp, InvivoGen, San Diego, CA) and checked regularly for mycoplasma contamination.
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4

Cell Proliferation and Death Analysis

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Cell proliferation and death were analyzed by counting total cell number with a hemocytometer after staining with trypan blue. Medium was changed on day 0 and 2 and every other 3 days after. Cell numbers were determined at time points indicated in figures. All experiments were performed at day 5, except if stated otherwise. For experiments under serine/glycine deprivation conditions, cells were fed homemade medium (homemade RPMI with the same formulation as commercial RPMI from Gibco, supplemented with 10% dialyzed FBS (Gibco) and standard concentrations of penicillin-streptomycin and glutamine) with or without serine and/or glycine (Sigma-Aldrich).
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5

Serine Metabolism Modulation in Cancer

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The stock of CBR5884 (Sigma-Aldrich; SML1656), NCT-503 (Sigma-Aldrich; SML1659), bortezomib (Selleck Chemicals, Munich, Germany; S1013), and carfilzomib (Active Biochemicals CO, Wan Chai, Hong Kong; A-1098) were prepared in dimethyl sulfoxide (Sigma-Aldrich). Antibodies used were against PHGDH (Cell Signaling Technology, Danvers, MA, USA; CST #66350), PSAT1 (#PA5-22124), PSPH (#sc-271421), cleaved PARP (CST #5625), cleaved caspase-3 (CST #9664) and β-Actin (CST #4970). L-serine (Sigma-Aldrich, MO, USA), Glycine (Millipore) and Minimum Essential Medium (MEM) (Gibco #21090) were used in serine starvation experiments.
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