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10 protocols using anti cd8a pe

1

Mouse Bone Marrow and Spleen Cell Isolation

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Bone marrow cells were collected from the femurs and tibiae of mice by flushing the opened bones with Iscove’s Modified Dulbecco’s medium (IMDM) as previously described (Dyer et al., 2008 (link)). Spleen cell suspensions in HBSS supplemented with 1% FBS and 10 mM HEPES were prepared as described (Dyer et al., 2011 (link)). Red blood cells were lysed with ACK lysing buffer (Lonza). Live/dead stain (Invitrogen) was added to the cells and non-specific antibody binding to Fc receptors was blocked with anti-mouse CD16/CD32 (BD Biosciences). For analysis of T and B cells, cell suspensions were incubated with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (eBioscience), anti-CD4-FITC (eBioscience), anti-CD8a-PE (BD), and anti-CD19-AF647 (BD) in phosphate-buffered saline with 0.1% bovine serum albumin (PBS/BSA) at 4°C for 30 min and washed with this buffer prior to analysis. For evaluation of myeloid cells, cell suspensions were incubated with anti-CD45-AF700 (BD), anti-CD11c-AF488 (BD), anti-SiglecF-PE (BD), anti-GR1-V450 (BD) and anti-MHCII-APC (eBioscience). At least 100,000 events were collected on an LSR II flow cytometer (BD Biosciences) and findings were analyzed in FlowJo 9.2.
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2

Isolation and Characterization of Murine Immune Cell Subsets

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Single-cell suspensions were prepared from spleen, bone marrow and thymus of 6-14 week old mice. Single-cell suspensions were stained with antibodies and analyzed using FACS Calibur with CellQuest software (BD Bioscence, San Diego, CA) or FlowJo software (Tree Star, Ashland, OR) (15 (link)). B220+CD43-IgM- small pre-B cells and CD4+CD8+ double-positive T cells were sorted by a MoFlo flow cytometer. Splenic B cells were purified using B cell isolation kits with MACS cell separation columns (Miltenyi Biotec, San Diego, CA). Generally we pooled bone marrow or splenic cells from 2-3 animals of the same genetic background for cell fractionation. Antibodies used are as follows: anti-mouse-Igκ-PE (BD Bioscience); anti-mouse-Igλ1,2,3-FITC (BD Bioscience); anti-human-Igκ-FITC (Southern Biotech, Birmingham, AL); anti-B220-PerCP-Cy5.5, anti-IgM-APC, anti-CD43-PE, anti-B220-FITC, anti–CD21-FITC, anti–CD23-APC, anti–CD4-FITC, anti–CD8a-PE, anti-B220-biotin (all from BD Bioscience); Streptavidin-APC (Southern Biotech).
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3

Characterization of Lung Cell Populations

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Lung tissue was harvested and single-cell suspensions were prepared as previously described (Garcia-Crespo et al., 2013 (link); Percopo et al., 2014a (link)). Live/Dead stain (Invitrogen) was added to the cells and Ab binding to Fc receptors was blocked with anti-mouse CD16/CD32. For analysis of T and B cells, lung suspensions were stained with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (eBioscience), anti-CD4-FITC (eBioscience), anti-CD8a-PE (BD), and anti-CD19-AF647 (BD) in PBS with 0.1% BSA at 4 °C for 30 min and washed with this buffer prior to analysis. For myeloid cell analysis, cells were stained with anti-CD45-AF700 (BD), anti-CD11c-AF488 (BD), anti-SiglecF-PE (BD), anti-GR1-V450 (BD) and anti-MHCII-APC (eBioscience). Natural killer cells were characterized by staining with anti-CD45-eF450 (eBioscience), anti-CD3-AF700 (BD), and anti-CD49/DX5-PE (BD). A minimum of 100,000 events were collected on an LSR II flow cytometer (BD Biosciences) and findings were analyzed in FlowJo 9.2.
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4

Multicolor Flow Cytometric Analysis

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Immunofluorescence staining of slides was performed as described for immunohistochemistry until antigen retrieval. Then, slides were treated with or without 1% Triton X-100 for 20 min, followed by blocking with 5% bovine serum albumin (BSA) for 1 h at room temperature. Subsequently, slides were incubated with anti-CD3e-FITC (BD), anti-CD8a-PE (BD), anti-CD4-PE (BD), anti-CD11b-FITC (BD), anti-Gr-1-PE (BD), anti-Foxp3-PE (BD), and anti-IL-17A-Alexa Fluor 647 (BD) for 30 min at room temperature. Slides were then washed three times with PBS-T, incubated with Hoechst-33342 for 5 min at room temperature, washed again with PBS-T three times, and sealed with glycerin.
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5

Stimulation and Analysis of Mouse T Cells

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Mouse cell suspensions were stimulated with 50 μg/mL of TT or HEL peptide in the presence of BD GolgiPlug™ (BD Biosciences) for 2 h (37 °C). Cells were fixed and stained using the BD Cytofix/Cytoperm™ Kit (BD Biosciences). Surface and intracellular staining (ICS) were performed according to the manufacturer’s instructions, with anti-CD4-FITC, anti-CD3-APC-eFluor®780, anti-CD19-PECy7, anti-TNF-α-PerCP-e710, anti-IL-2-APC and anti-IFNγ-EF450 from eBioscience and anti-CD8a-PE from BD Biosciences.
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6

Profiling Immune Cell Activation

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The harvested tumors were cut into small pieces, digested at 37 °C for 1 h, and filtered through 70 μm cell strainers to obtain single cell suspensions. After blocking with FcγIII/IIR-blocking Ab, the cells were stained with fluorescence-labeled antibodies at a dilution of 1:200. For macrophage re-polarization, the cells were stained with anti-CD86-Brilliant Violet 421™ (BioLegend, Clone: GL-1, Catalog: B318824) and anti-CD206-PE-CYN7 (Thermo, Clone: MR6F3, Catalog: 25-2061-82). For DCs maturation, the cells were stained with Anti-CD11c-APC/Cy7® (Abcam, Clone: 3.9, Catalog: ab272330), and anti-CD86-Brilliant Violet 421™. For T cells activation, the cells were stained with anti-CD8a-PE (BD Pharmingen, Clone: 53-6.7, Catalog: 553032), anti-CD4-Percp/Cy™5.5 (BD Pharmingen, Clone: RM4-5, Catalog: 550954) and anti–IFN–γ-FITC (BD, Clone: XMG1.2, Catalog: 554411). Afterward, the samples were analyzed by flow cytometry (FACSVerse, BD, USA).
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7

Multiparametric Flow Cytometry Assay

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APC-anti-CD3e, PE-Cy7-anti-CD3e, FITC-anti-CD3e, PE-anti-CD8a, PerCp-anti-CD8a, Alex700-anti-CD19, FITC-anti-CD44, APC-anti-CD44, V450-anti-CD44, PE-anti-IFN-γ, PE-Cy7-anti-TNF-α were purchased from BD Biosciences (Australia); PE-Cy7-anti-CD25, FITC-anti-CD27, APC-anti-CD27, Alexa647-anti-CD107a, eFluo450-anti-CD122, PE-anti-T-bet and Alexa700-anti-Eomes and purified anti-mouse MHC I-SIINFEKL complex (clone 25D) were purchased from eBioscience (Jomar Bioscience, Kensington, SA., Australia); PerCp-Cy5.5-anti-CD62L, PE-Cy7-anti-CD69 and purified anti-CD11c were purchased from BioLegend, (Australian Biosearch, Karrinyup, WA., Australia); APC-H-2Kb-SIINFEKL pentamer was purchased from ProImmune (Oxford, UK).
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8

Flow Cytometry for Immune Cell Quantification

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The flow cytometry procedure for identification and quantification of circulating inflammatory and immune cells was based on our previous report [34 (link)]. Prior to sacrificing the animals, peripheral blood mononuclear cells (PBMCs) were obtained from the tail vein using a 27# needle. PBMCs (1.0 × 106 cells) were triple-stained with FITC-anti-CD3 (BioLegend), PE-anti-CD8a (BD Bioscience, San Jose, CA, USA), and PE-Cy™5 anti-CD4 (BD Bioscience, San Jose, CA, USA). To identify CD4+CD25+Foxp3+ regulatory T cells (Tregs), PBMCs were triple-stained with Alexa Fluor® 488-anti-CD25 (BioLegend, San Diego, CA, USA), PE-anti-Foxp3 (BioLegend, San Diego, CA, USA), and PE-Cy™5 anti-CD4 (BD bioscience, San Jose, CA, USA) according to the manufacturer's protocol for the Foxp3 Fix/Perm buffer set. The numbers of CD3+CD4+ helper T cells, CD3+CD8+ cytotoxic T cells and CD4+CD25+Foxp3+ Tregs were analyzed using flow cytometry (FC500, Beckman Coulter, Brea, CA, USA).
Additionally, the numbers of inflammatory cells in circulation [i.e., CD11b/c, LyG6, vascular cell adhesion molecule (VCAM)-1], in ascites [macrophage migratory inhibitor factor (MIF), CD14, CD11b/c, LyG6, CD68/CD80, CD68/CD163], and in ABL (CD11b/c, MIF, Ly6G) were assessed using the flow cytometric method.
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9

Identification and Quantification of Immune Cells

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The procedure and protocol of flow cytometry for identification and quantification of circulating and splenic immune cells were based on our previous report [44 (link)]. Briefly, the peripheral blood mononuclear cells (PBMCs) and splenocytes were obtained from the tail vein using a 27# needle. PBMCs and splenocytes (1.0 × 106 cells) were triple-stained with FITC-anti-CD3 (BioLegend), PE-anti-CD8a (BD Bioscience), and PE-Cy™5 anti-CD4 (BD bioscience). The numbers of CD3+CD4+ helper T cells and CD3+CD8+ cytotoxic T cells were analyzed using flow cytometry (FC500, Beckman Coulter).
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10

Flow Cytometry for Inflammatory Cell Analysis

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The procedure and protocol of flow cytometry for identification and quantification of inflammatory and immune cells were based on our previous report42 (link). Briefly, prior to sacrificing the animals, peripheral blood mononuclear cells (PBMCs) were obtained from the tail vein using a 27# needle. PBMCs (1.0 × 106 cells) were triple stained with FITC-anti-CD3 (BioLegend, San Diego, CA, USA), PE-anti-CD8a (BD Biosciences, San Jose, CA, USA), and PE-Cy™5 anti-CD4 (BD Biosciences). To identify CD4+CD25+Foxp3+ regulatory T cells (Tregs), PBMCs were triple stained with Alexa Fluor® 488-anti-CD25 (BioLegend), PE-anti-Foxp3 (BioLegend), and PE-Cy™5 anti-CD4 (BD Biosciences) according to the manufacturer’s protocol of Foxp3 Fix/Perm buffer set. The numbers of CD3+CD4+ helper T cells, CD3+CD8+ cytotoxic T cells, and CD4+CD25+Foxp3+ Tregs were analyzed using flow cytometry (FC500, Beckman Coulter, Brea, CA, USA). Additionally, the numbers of inflammatory cells (CD11b+/CD86+, CD11b+/CD206+, CD68+/CD80+, CD68+/CD163+, CD11b/c+, Ly6G+) in circulation or in bronchioalveolar lavage (BAL) fluid were also assessed by flow cytometry.
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