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4 protocols using pecy7 anti ckit

1

Murine Embryonic and Bone Marrow Hematopoiesis

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E9.5 and E10.5 whole embryos or dissected yolk sacs were disaggregated with 0.25% collagenase type I (Stemcell Technologies) at 37°C for 30 min, and the cells were washed with PBS containing 2% FBS (Gibco) and filtered through a 70‐μm mesh. The single‐cell suspension was then incubated for 30 min at 4°C with the following antibodies: anti‐CD71‐FITC (BD Biosciences), anti‐Ter119‐APC (BD Biosciences), anti‐cKit‐PEcy7 (BD Biosciences), and anti‐CD41‐PE (BD Biosciences). Samples were analyzed with the BD LSRFortessa flow cytometer.
Bone marrow of adult mice was obtained from femurs and tibias crushed in a mortar and filtered through a 70‐μm mesh to obtain single‐cell suspensions. For hematopoietic cell maturation assays, a small fraction of the bone marrow was separated and the rest was depleted of red blood cells by lysis in FACSLysing solution (BD Biosciences). Antibodies used for blood maturation assay were anti‐CD71‐FITC (BD Biosciences) and anti‐Ter119‐APC (BD Biosciences). Antibodies for BM precursor sorting were Biotinylated lineage cocktail (BD Biosciences), anti‐CD34(RAM34)‐FITC (BD Biosciences), anti‐cKit‐PEcy7 (BD Biosciences), anti‐CD16/32‐BV605 (BD Biosciences), and anti‐Sca1‐PerCP‐Cy5.5 (BD Biosciences).
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2

Antibodies and Reagents for DNA Damage Response

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The anti‐α‐tubulin antibody, aphidicolin, and nocodazole were purchased from Sigma‐Aldrich. The anti‐p‐ATM (Ser1981), cGAS, and GFP antibody were from Santa Cruz. Antibodies against ATM, Flag, mouse cGAS, human cGAS, STING, MRE11, PARP1, H2A, H2A.X, γ‐H2A.X p‐IRF3, and IRF3 were from Cell Signaling Technology; Alexa 488‐anti‐Sca‐1 was from Invitrogen and PECY7‐anti‐cKit; V450‐Ly6G and FITC‐anti‐GR1 were from BD Pharmingen; 2′,3′‐cGAMP and immunostimulatory DNA (ISD) were from InvivoGen; and ATP was from New England Biology, while GTP, Rad51, and Lamin B1 antibody were from Abcam.
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3

Immunofluorescence Staining Protocol

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Pam3CSK4 and poly(dA:dT) were purchased from Invivogen. DAPI, Antibodies against β‐Actin and β‐Tubulin were purchased from Sigma‐Aldrich. Caspase‐1 p20 antibody (Clone 4B4.2.1) was obtained from Genentech, San Francisco USA. IL‐1β antibody was from R&D Systems. Antibodies against H2A, H2A.X, γ‐H2A.X, P53, and p‐P53(S15) were from Cell Signaling Technology. 53BP1 antibody was obtained from Novus biologicals. Anti‐HA, anti‐GFP, and anti‐BRCA1 antibodies were purchased from Santa Cruz Biotechnology. Pyhin1 and Ifi205b(Mnda) antibody were purchased from Mybiosource. mCherry, Alexa488‐Anti‐Sca‐1 was from Invitrogen and PE/Cy7‐Anti‐cKit, V450‐Anti‐Ly6C, FITC‐Anti‐GR1 were from BD Pharmingen.
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4

Multiplex Flow Cytometry of Hematopoietic Stem Cells

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BM cells were collected from tibias and femurs and stained with anti-c-kit PE-Cy7 (BD Biosciences), anti-Sca-1 APC-Cy7 (BD Biosciences), anti-lineage V450 (BD Biosciences), anti-CD48 FITC (Biolegend), anti-CD127 FITC (BD Biosciences), anti-CD41 Alexa Fluor 488 (Biolegend), anti-CD34 APC (BD Biosciences), anti-CD135 PE (BD Biosciences), anti-CD16/32 PerCP (BD Biosciences) and anti-CD150 Alexa Fluor 647 (Biolegend). BM HSCs (CD150+CD48-Lineage-Sca-1+c-Kit+), MPPs (CD150-CD48-Lineage-Sca-1+c-Kit+), CMPs (CD34+CD16/32lowCD127-Lineage-Sca-1-c-Kit+), GMPs (CD34+CD16/32highCD127-Lineage-Sca-1-c-Kit+), MEPs (CD34-CD16/32-/lowCD127-Lineage-Sca-1-c-Kit+), MkPs (CD150+CD41+Lineage-Sca-1-c-Kit+) and EPs (CD71+Ter119+) were stained with the indicated cell surface marker antibodies. For intracellular phosphoprotein analysis, BM cells were flushed into serum-free PBS. BM cells were stained with surface marker antibodies, then washed with PBS and fixed for 15 minutes at 4°C, followed by incubation with BD c ytoperm buffer for 30 minutes at room temperature. Rabbit anti-pS6K (Thr389) (Cell Signaling Technology) or anti-pAkt PE (Cell Signaling Technology) were added at 1:50 dilution for 30 minutes. For pS6K staining, cells were incubated with anti-rabbit IgG PE (Cell Signaling Technology) at 1:500 for 30 minutes. Flow cytometric analysis was performed on a FACS CANTO II (BD Biosciences).
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