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5 protocols using ab86695

1

Molecular Mechanisms of GBE-Mediated Cytoprotection

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GBE was provided by Wanbangde Pharmaceutical Group Co., Ltd. Chemicals such as L-glutamate, MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide), DCFH-DA and DMSO were obtained from Sigma-Aldrich; Merck KGaA. Antibody were obtained from Santa Cruz Biotechnology, Inc. or Abcam: p-SRC (ab40660, Abcam), SRC (ab109381, Abcam), p-VAV2 (ab86695, Abcam), Vav2 (ab52640, Abcam), p-p66Shc (ab68166, Abcam), p66Shc (ab33770, Abcam), cytochrome c (ab133504, Abcam), β-actin (sc-58673, Santa Cruz Biotechnology, Inc.), prohibitin (sc-377037, Santa Cruz Biotechnology, Inc.), Goat Anti-Rabbit IgG H&L (HRP) (ab7090, Abcam), Goat Anti-Mouse IgG H&L (HRP) (ab205719, Abcam). Rac1 activity assay kit was obtained from Cell Biolabs. Amplex Red hydrogen peroxide/peroxidase assay kit was obtained from Thermo Fisher Scientific, Inc. Caspase-3 Activity assay kit was obtained from Abcam. Other chemicals and reagents used in this study were obtained from Beyotime.
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2

Immunofluorescence Analysis of Hedgehog Signaling

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Immunofluorescence was performed on chamber slides (Nalge Nunc International, Naperville, IL). After rinsed in PBS, samples (cells or limb bud tissues) were fixed in ice-cold methanol and permeabilized with 0.1% Triton X-100 in PBS (PBST). After incubation with blocking buffer for 30 min at room temperature, samples were incubated with primary antibodies against Smo (ab236465, abcam), Gli1 (sc-20687, Santa Cruz), pVav2 (ab86695, abcam), Vav2 (sc-271442, Santa Cruz), acetylated-αTubulin (sc-23950, Santa Cruz), KIF3A (sc-376680, Santa Cruz), IFT88 (sc-84318, Santa Cruz), pPAK1 (#2601, Cell Signaling Technology), PAK1 (#2602, Cell Signaling Technology), Arl13b (17711-1-AP, Proteintech) or β-actin (sc-47778, Santa Cruz) overnight at 4 °C. After washing with PBST, samples were further incubated with Alexa 488-conjugated or 555-conjugated secondary antibody (Life Technology). The nuclei were counterstained with 6'-diamidino-2-phenylindole (DAPI), and immunostaining was analyzed by a laser scanning microscope (Zeiss).
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3

Investigating Oxidative Stress Pathways

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Chemicals such as RAC1 inhibitor NSC23766 and NOX (NADPH oxidase) inhibitor VAS2870 were purchased from MCE Biotechnology. MTT (3-(4,5-Dimethylthiazol-2-yl)−2,5-diphenyltetrazolium bromide) cell proliferation assay kit was purchased from Solarbio. Reagents such as antibodies were purchased from Abcam, Santa Cruz Biotechnology and NOVUS: p-SRC (ab40660, Abcam), SRC (ab109381, Abcam), p-Vav2 (ab86695, Abcam), Vav2 (ab52640, Abcam), p-p66SHC (ab68166, Abcam), p66SHC (ab33770, Abcam), GAPDH (ab8245, Abcam), Prohibitin (sc-377037, Santa Cruz Biotechnology), NOX4 (NB110-58849, NOVUS), GFAP (ab7260, Abcam). RAC1 activity assay kit was purchased from Cell Biolabs. NOX activity assay kit, MDA (malondialdehyde) assay kit and SOD (super oxide dismutase) activity assay kit were purchased from Solarbio and Abcam. Other chemicals and reagents used in this study were obtained from Beyotime and Sangon.
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4

Immunohistochemical Analysis of Ciliary and Signaling Proteins

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Freshly sampled human tissues, mouse tissues or cells were flushed with ice-cold PBS and fixed by incubation in 4% paraformaldehyde in PBS overnight at 4 °C. Fixed samples were dehydrated, embedded in paraffin, and sectioned. The sections were de-waxed and rehydrated. Endogenous peroxidase activity was blocked by incubation in 0.3% hydrogen peroxide in methanol for 30 min at room temperature. Antigen retrieval was performed by boiling for 15 min in citrate buffer pH 6.0 or Tris-EDTA pH 9.0. Tissues were incubated overnight at 4 °C with the following primary antibodies: anti-IFT88 (sc-84318, Santa Cruz), anti-Gli1 (ab49314, abcam), anti-Ptch1 (ab53715, abcam), anti-KIF3A (sc-376680, Santa Cruz), anti-pVav2 (ab86695, abcam), anti-PAK1 (#2602, Cell Signaling Technology) and anti-pPAK1 (#2601, Cell Signaling Technology). Staining was performed using the Zsbio kit (Beijing, China) according to the manufacturer's instructions.
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5

Western Blot Analysis of Cellular Proteins

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Western blots were performed using standard protocols in 10% SDS-PAGE and transferred to PVDF membranes (Bio-Rad, Hercules, CA, USA). Primary antibody and dilutions used were the following: mouse monoclonal anti-HA (11 583 816 001, Roche, Mannheim, Germany); rabbit polyclonal anti-NIS (24324-1-AP, Protein-tech, Rosemont, IL, USA); mouse monoclonal anti-PCNA (NA03, Merck, Darmstadt, Germany); rabbit anti-GLUT1 (ab652; Abcam, Cambridge, UK); goat anti-GLUT1 (sc-1603; Santa Cruz Biotechnology, Santa Cruz, CA, USA); mouse monoclonal anti-RAC1 (05-389, Millipore, Burlington, MA, USA); mouse monoclonal anti-SRC antibody (60315-1-lg, Proteintech, Rosemont, IL, USA); rabbit anti-phospho Y416-SRC antibody D49G4 (#6943, Cell Signaling, Danvers, MA, USA); mouse monoclonal anti-VAV2 antibody (sc-271442, Santa Cruz Biotechnology, Santa Cruz, CA, USA); rabbit polyclonal anti-phospho Y172-VAV2 antibody (ab86695, Abcam, Cambridge, UK); mouse monoclonal anti-P120 catenin antibody 15D2 (#33-9600, Thermofisher, Waltham, MA, USA); rabbit polyclonal anti-phospho Y228-P120 catenin (329050; US Biological, Salem, MA, USA). HRP-labeled anti-rabbit or anti-mouse IgG secondary antibodies (Bio-Rad, Hercules, CA, USA) were used for chemiluminescence imaging.
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