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3 protocols using anti collagen 1 antibody

1

Antibody Optimization for Western Blot

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Primary antibodies for Western blot analysis were as follows: anti-LOX1 antibody (Santa Cruz Biotechnology, Santa Cruz, CA), anti-STRA6 antibody (ABGENT, San Diego, CA), anti-CRBP1 antibody (Santa Cruz Biotechnology), anti-RARα antibody (Santa Cruz Biotechnology), anti-RARγ antibody (Santa Cruz Biotechnology), anti-RXRα antibody (Santa Cruz Biotechnology), anti-c-Jun N-terminal kinase (JNK) antibody (Santa Cruz Biotechnology), anti-pJNK antibody (Abcam, Cambridge, MA), anti-p38MAPK antibody (ABGENT), anti-p-p38MAPK antibody (ABGENT), anti-pSmad2 antibody (Santa Cruz Biotechnology), anti-Smad2 antibody (Santa Cruz Biotechnology), anti-TGFβ1 (Santa Cruz Biotechnology), anti-caspase 3 antibody (Santa Cruz Biotechnology), anti-collagen 1 antibody (Santa Cruz Biotechnology), and anti-actin antibody (Millipore, Temecula, CA). Secondary antibodies for Western blot analysis as HRP-conjugate antibody were purchased from Millipore. The inhibitors of JNK, SP600125 and p38MAPK, SB203580 were purchased from Sigma-Aldrich (St. Louis, MO).
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2

Kidney Immunohistochemistry Analysis

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After deparaffinization and rehydration, kidney sections of saline-, L1-, or L5-injected mice, or L5-injected LOX1−/− mice were placed in 0.01 M sodium citrate buffer (pH 6.0) and heated in a microwave oven for 2.5 min at 720 W. For Mason’s trichrome stain, sections were stained according to the protocol of the manufacturer (Sigma-Aldrich). For IHC, sections were washed in PBS and incubated with 1% BSA for 30 min to block nonspecific staining. Sections were drained and incubated for 3 h at room temperature in a humidity chamber with respective antibody for IHC, including anti-STRA6 antibody (ABGENT), anti-collagen 1 antibody (Santa Cruz Biotechnology Inc.), or anti-vitamin A antibody (MyBioSource, San Diego, CA) diluted with antibody diluent (Dako, Carpentaria, CA). After washing in PBS, endogenous peroxidase activity was blocked by incubation in 0.3% H2O2 in methanol for 20 min, followed by sequential 10 min incubations with biotinylated link antibody and peroxidase-labeled streptavidin (Dako). Staining was completed after incubation with 3,3’-diaminobenzidine substrate-chromogen solution (Dako), and then counterstained with hematoxylin. Images from similar regions of sections of kidney were captured by bright field microscopy at 400× microscopic magnification.
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3

Protein Extraction and Western Blot Analysis

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Proteins were extracted from the harvested hind limbs of 3-week-old rats. Isolated femurs and tibias were snap-frozen by adding liquid nitrogen on a mortar and homogenized using a pestle. Pulverized samples were incubated in the red blood cell lysis buffer (155 mM NH4Cl, 140 mM NaHCO3, and 0.1 mM EDTA, pH 7.3) for 10 min, and supernatants were removed by centrifuge. Pellets were lysed in ice-cold RIPA buffer containing protease inhibitor cocktails (Roche Applied Science). A controlled amount of proteins was separated using SDS-PAGE and transferred onto a PVDF membrane using an electroblot. After blocking with 5% milk TBS-T, the blots were probed using primary antibodies (anti-ZIP8 antibody, Pierce Biotechnology, Inc.; anti-Runx2 antibody, Sigma-Aldrich Co.; anti-β-actin antibody, Cell Signaling Technology, Inc.; and anti-Collagen-1 antibody, Santa Cruz Biotech.) and followed by a horseradish peroxidase-conjugated secondary antibody. Chemiluminescent reagents were used to detect immunoreactive proteins, and the membrane was exposed to X-ray films.
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