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44 protocols using n acetyl d glucosamine

1

Lectin Binding Assay for PPMVECs

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The fixed PPMVECs were washed and blocked with 10% albumen solution for 30 min. After washing, cells were incubated with FITC-conjugated lectins overnight at 4 °C. LCA (FL-1041), STL (FL-1161), RCA-I (FL-1081), LEL (FL-1175), PHA-E (FL-1211), and DSA (FL-1181) were purchased from Vector Laboratories Inc (Burlingame, CA, USA) and used at the concentration of 6 μg/mL. For their hapten sugar blocking controls, the lectins were preincubated for 1 h with 0.2 M methyl-alpha-D-mannopyranoside (Alfa Aesar, A11533, Ward Hill, MA, USA), N-acetyl-D-glucosamine (Sigma Aldrich, A8625, Saint Louis, MO, USA), D-(z)-galactose (Sigma Aldrich, G0625), N-acetyl-D-glucosamine, D-(z)-galactose and N-acetyl-D-glucosamine, respectively. The cell nuclei were counterstained with DAPI, and cells were washed and mounted in glycerol. The micrographs were obtained with the Olympus IX71 microscope at 490 and 350 nm, respectively, and then the single-channel images were merged.
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2

Quantification of Bioactive Compounds in Plant Extracts

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All chemicals were of analytical grade, purchased from Merck (Rahway, NJ, USA)/Italy-Sigma-Aldrich (Milano, Italy) and used as received. In detail, these included the following: caffeine (CAF), theophylline (THEO), perchloric acid (HClO4), 70%, acetic acid (AA), potassium hydroxide (KOH) ≥ 85% pellets, sodium hydroxide (NaOH), potassium ferricyanide (K3[Fe(CN)6]), 5-caffeoylquinic acid (CQA), ferulic acid (FA), catechin (C), epicatechin (EC), and formic acid (FA). Ethanol (EtOH) was purchased from Merck/Italy-Sigma-Aldrich; HPLC-grade acetonitrile and methanol were purchased from Carlo Erba (Milano, Italy); HPLC-grade water was freshly prepared by the Milli-Q purification system (Millipore, Vimodrone, Italy). Medium-molecular-weight chitosan (CS, 5800 g mol−1), composed of β-(1-4)-linked d-glucosamine and N-acetyl-d-glucosamine with a degree of deacetylation of 75–85% was purchased from Merck/Italy-Sigma-Aldrich.
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3

Quantification of Human Milk Oligosaccharides

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Human milk oligosaccharide standards, lacto-N-tetraose (LNT), lacto-N-neotetraose (LNnT), sialyllacto-N-tetraose a (LSTa), sialyllacto-N-tetraose b (LSTb), lacto-N-fucopentaose II (LNFP II), lacto-N-fucopentaose III (LNFP III), 3′-sialyllactose (3′-SL), and 6′-sialyllactose (6′-SL), were kindly provided by DSM (Hørsholm, Denmark). Deuterium oxide D2O (99.9 atom% D), 3-(trimethylsilyl)-1-propanesulfonic acid sodium salt (DSS), and N-acetyl-D-glucosamine were purchased from Merck (Darmstadt, Germany). N,N′,N″,N‴-Tetraacetylchitotetraose was purchased from Carbosynth (Compton, United Kingdom). Sodium phosphate was purchased from Reanal (Budapest, Hungary). Water was prepared freshly, using Select Fusion water purification system (SUEZ Water Technologies & Solutions, Feasterville-Trevose, PA, USA). The SevenCompact S210 pH-meter and standard reference buffers (pH 2.00, 4.01, and 7.00) were purchased from Mettler-Toledo (Greifensee, Switzerland).
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4

Carbohydrate Standards for Glycoprotein Analysis

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Sodium borohydride and sodium hydroxide were purchased from Sigma-Aldrich; Merck KGaA (Darmstadt, Germany). Fetuin glycoprotein standard was obtained from Sigma-Aldrich; Merck KGaA. D-galactose, D-mannose and N-acetyl-D-glucosamine were obtained from EMD Millipore (Billerica, MA, USA).
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5

Chitosan from Litopenaeus vannamei Shrimp

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Medium molecular weight chitosan from the exoskeleton of Lipopenaeus vannamei shrimp (Mv = 270 kDa) determined by viscometry (PSL Rheotek, São Paulo, Brazil) [41 (link)], and the degree of deacetylation (DD = 88%) determined by the infrared spectroscopy (Perkin Elmer, Beaconsfield, U.K.) method [41 (link)] were produced in the Northeastern Biomaterials Evaluation and Development Laboratory—CERTBIO (Campina Grande, PB, Brazil). This chitosan (CS) is accredited by the National Institute of Metrology, Quality and Technollogy (INMETRO) at the International Organization of Standardization (ISO)/International Electrotechnical Commission (IEC) 17025:2005, and is used for medical applications. Lactic acid was obtained from Vetec® (Duque de Caixas/Rio de Janeiro, Brazil). Sodium hydroxide (NaOH) and methanol (CH3OH) were purchased from Neon® (São Paulo, Brazil). N-acetyl-D-glucosamine (>99%), phosphate buffered saline (PBS), and lysozyme (hen egg-white—HEW) were purchased from Sigma-Aldrich® (Darmstadt, Germany).
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6

Extraction and Analysis of Himalayan Plant Polysaccharides

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Roots of Mirabilis himalaica (Edgew) heim were purchased from Qinghai Tibetan hospital in Qinghai (batch number: 20161023; Xining, Qinghai province, China). Dextran standards (5800, 11 800, 47 300, 100 000, 380 000, and 788 000 Da) were acquired from Pharmacia Biotech (Uppsala, Sweden). Standard monosaccharides (glucose, d-glucosamine hydrochloride, mannose, rhamnose, ribose, galactose, fucose, N-acetyl-d-glucosamine, d-galactosamine hydrochloride, xylose, fructose, arabinose, guluronic acid, mannuronic acid, galacturonic acid, glucuronic acid) were purchased from Sigma chemical. Dialysis membranes (size 36, MWCO = 8–14 kDa) were purchased from Wako. Acetic acid, acetic anhydride, sodium borohydride, chloroform, NaOH powder, DMSO, iodomethane, formic acid, methanol, trifluoroacetic acid were all analytical reagents.
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7

Characterization of Carbonyl Modifications

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Myoglobin from equine skeletal muscle (95–100% purity, lyophilized powder), N-acetyl-D-glucosamine (≥99% purity), D-glucose (≥99.5% purity), D-glucosamine hydrochloride (≥99% purity), potassium phosphate monobasic and dibasic, sodium azide, HPLC-grade solvents (acetonitrile, methanol, formic acid, trifluoroacetic acid), glucosone (2-keto-D-glucose; ≥98.0% purity; MW 178.14 Da), glyoxal (ethanedial; 40% in H2O; MW 58.04 Da), methylglyoxal (2-oxopropanal; 40% in H2O; MW 72.06 Da), diacetyl (butane-2,3-dione; ≥95.0% purity; MW 86.09 Da), 1,2-diaminobenzene, DTPA and Thioflavin T were purchased from Sigma-Aldrich (St. Louis, MO). 3-deoxyglucosone (3-Deoxy-D-erythro-hexosulose; ≥95% purity; MW 162.14 Da) was obtained from Cayman Chemical (Ann Arbor, MI). SPE tC-18 Sep-Pak Vac 6 cc columns were obtained from Waters (Milford, MA). Filtration membranes (0.22 μm) were from Millipore (Billerica, MA). 3,5 dimethoxy-4-hydroxycinnamic acid (sinapinic acid), ProMix3 (mass spectrometry protein standards) were obtained from LaserBiolabs. Standard ion calibration solution (Pierce LTQ) for electrospray ionization in positive mode was purchased from Thermo Scientific (Rockford, IL, USA). Milli-Q purified distilled water for buffers and reagents preparations were purchased from Waters Millipore (Milford, MA, USA). All the reagents and chemicals used in the study were of analytical grade.
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8

Carbohydrate Inhibition Assay for Cockroach Lectins

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Carbohydrate inhibition assays were followed as mentioned by Chen et al. (24 (link)). The sugar specificities of cockroach lectins were investigated by competitive binding using the following carbohydrates: D-(+)-glucose, D-(+)-galactose, D-(+)-mannose, L-(−)-fucose, lactose, N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, fructose and arabinose (all purchased from Sigma Co.). Stock solutions of sugars were prepared in PBS at 0.2M and stored in −4 °C until use. Two folded serial dilutions of haemolymph (each of 5μl) were prepared in PBS followed by addition of 5μl of appropriate carbohydrate at the above initial concentration. The plates were incubated at room temperature for 60min and then 5μl of the mouse RBCs added to the respective wells. The controls were consisted of carbohydrate plus PBS, and plus RBCs alone. Inhibitory effects were recorded as those reducing agglutination in the wells. The end points of agglutination were examined under a stereomicroscope and by the flow characteristics of the erythrocyte pellets when the plate was held at an angle. This experiment was replicated three times.
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9

Induction of Hyphal Formation in Candida albicans

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To induce hypha formation, C. albicans strains were grown for 12 h in YPD, diluted to an OD600 of 0.3 to 0.4 in RPMI or yeast nitrogen base (YNB) containing 1.25% N-acetyl-d-glucosamine (GlcNAc; Sigma), and incubated for 2 to 4 h at 37°C. Both RPMI and YNB+GlcNAc were supplemented with 0.1% 2-deoxyglucose (2-DG), 0.2% sodium acetate, or 0.2% sodium acetate with 5 mM F1,6-BP. Images were acquired using bright-field microscopy with a Zeiss Axio Observer Z1 microscope at a magnification of ×10. Hyphal formation was determined in multiple fields from at least 100 cells, and percent germination was calculated as the number of germinated cells relative to total observed C. albicans cells.
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10

CEST MRI of Metabolite Solutions

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Solutions of 10 mM d-mannose, d-galactose, N-acetyl-D-glucosamine, d-glucose, l-glutamine and l-lactate (all from Sigma-Aldrich) were prepared in 10 mM phosphate buffered saline (PBS) at different pH values or 10 mM Tris-HCl buffer at pH 7.4. Cultured cells were detached with 0.05% trypsin-EDTA and washed with PBS three times before suspension in 0.5% w/v agarose (Sigma A9414) in PBS at a concentration of 1 × 107 cells per ml, and then transferred to a 5 mm NMR tube. CEST MRI was performed on a Bruker Biospin 11.7 T vertical bore scanner equipped with a 20 mm birdcage transmit/receive coil. A modified rapid acquisition with refocused echoes (RARE) sequence46 (link) was used with repetition time/echo time (TR/TE) = 6,000 per 5 ms, RARE factor = 32, number of acquisition (NA) = 2, slice thickness = 2 mm, field of view (FOV) = 16 × 16 mm, matrix size = 64 × 64, resolution = 0.25 × 0.25 mm, B1 = 2.4 μT and tsat = 4 s. The saturation offset frequencies were acquired from −5 to 5 ppm (with 0.2 ppm increments), with the water resonance frequency set at 0 ppm. The total acquisition time was 20 min and 48 s.
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