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22 protocols using genesys 50

1

Investigating Msp1 Fungicidal Activity on Metarhizium

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To determine whether Msp1 could damage fungal cells, we germinated the spores of M. robertsii (5 × 106 conidia/ml) in LB with the addition of Msp1 at a final concentration of 10 µg/ml in a Petri dish (60 mm in diameter). The mock group was included without the addition of Msp1. Each group had three replicates. After 12 h, the supernatants were carefully removed with a pipette, and fungal cells were fixed in 4% formaldehyde for 12 h. The samples were then dehydrated for observation using the Field-Emission Scanning Electron Microscope (Merlin Compact VP, Zeiss) [42 (link)].
We also performed ninhydrin staining assays after treating Metarhizium spores with Msp1 [43 (link)]. The supernatants collected above were centrifuged at 12,000 rpm for 30 min, transferred, and added with PBS containing 2% (w/v) ninhydrin. A reference control group was included by only containing Msp1 protein (10 µg/ml). The samples were boiled in a water bath for 15 min, and immediately cooled on ice. Sample absorbance was measured at a wavelength of 570 nm with a spectrophotometer (GENESYS 50™, Thermo Fisher Scientific) [43 (link)].
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2

Comprehensive Analytical Characterization Protocol

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1H and 13C NMR spectra were recorded at a Bruker advance III 400-MHz NMR instrument. HRMS spectra were obtained on a Thermo Scientific Orbitrap Q Exactive ion trap mass spectrometer and QTOF-MS (Bruker Daltonics, times TOF). UV–vis spectra were determined on a Thermo Scientific GENESYS 50 UV–visible spectrophotometer. Elemental analyses were performed at an Elementar Vario EL analyzer. Dynamic light-scattering experiments were performed with a Brookhaven Elite Sizer zata-potential and a particle-size analyzer. Photoluminescence quantum yields were determined using a FLS 980 (Edinburgh instruments) absolute photoluminescence quantum yield measurement system and integrating sphere as a sample chamber. The steady-state fluorescence of solid samples was measured with FLS 920 fluorescence spectrometer (Edinburgh instruments).
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3

Lipid Oxidation Measurement via Peroxide Value

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Peroxide value was measured as an indicator of lipid oxidation. A sample (1 g) was extracted in 10 mL distilled water (17 (link)). A volume of 400 μL of extract was vortexed for 10 s after adding 1.5 mL of V(isooctane):V(isopropanol)=2:1.To measure the peroxide value, the supernatant was taken from the separate phases. Spectrophotometer (GENESYS 50; ThermoFisher Scientific, Mumbai, MH, India) was used to measure peroxide value according to the International Dairy Federation (IDF) standard method with minor modifications (28 (link)). A volume of 400 μL of extract was added to 9.6 mL of a V(chloroform):V(methanol)=7:3 mixture. Colour was developed with 50 μL of ammonium thiocyanate and iron(II) chloride solution which was freshly prepared by adding 3.94 M thiocyanate to Fe(II) solution. The samples were briefly vortexed and allowed to react in the dark for 30 min. The absorbance was measured at 500 nm and the peroxide value (mg per kg oil) was calculated according to the following equation:
where As is the absorbance of the sample, Ab is the absorbance of blank, m is the slope of standard curve and m0 is the mass in grams of the sample. Standard was prepared with iron(III) chloride.
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4

Lentil-based Probiotic Yogurt Fermentation

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A cell suspension of the tested strains was prepared by inoculating 10 mL MRS broth with a single colony and incubating at 30 °C for 24 h. From this pre-inoculum, 100 µL were sub-cultured into 10 mL fresh MRS broth and incubated for further 24 h. The concentration of colony forming units (CFU) was measured by optical density at a wavelength of 600 nm using a UV-VIS spectrophotometer (Genesys 50, Thermo Scientific, Waltham, MA, USA). The amount of inoculum necessary to reach 7 log CFU per g lentil emulsion was centrifuged at 4500 rpm for 5 min, the pellet was washed in 10 mL sterile tap water and centrifuged again. The resulting pellet was suspended in fructose-containing lentil emulsion heated to 30 °C, shaken manually for 5 min, transferred to sterile containers and fermented for 12 h at 30 °C. For the control, the necessary amount of frozen Yoflex culture to reach 7 log CFU per g lentil emulsion was added to sucrose-containing lentil emulsion heated to 42 °C, shaken manually for 5 min, transferred to sterile containers and fermented for 12 h at 42 °C. The YA were stored at 6 °C for 12–16 h prior to further analyses. Each fermentation was performed in three biological replicates.
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5

Spectrophotometric Chlorophyll and Carotenoid Analysis

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The total concentrations of chlorophylls (CHL) and carotenoids (TCA) were determined in green juice fractions and ethanol extracts by spectrophotometry. The absorbance was measured at 470 nm, 649 nm, and 665 nm using a UV-visible spectrophotometer (Genesys 50, Thermo Scientific, Waltham, CA, USA) with a quartz cuvette. Turbidity at 750 nm was considered. Calculations were carried out using the formulas described by Lichtenthaler and Wellburn [102 (link)]:


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6

Quantification of Total Flavonoids in Basil

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Total flavonoid content was determined by aluminum chloride colorimetric assay (Zhishen et al., 1999 (link)). Total flavonoid content was extracted from 300 mg of frozen ground basil and 1.5 ml of methanol/H2O/acetone (60:30:10 v/v/v) in an ultrasonic bath (Branson 2800, Richmond, VA, United States) for 15 min. Samples were centrifuged at 15,000 RCF (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Waltham, MA, United States) at 4°C for 10 min, and the supernatant was collected. Catechin was used as a quantifying standard. In a 3-ml cuvette, 50 μL of the extracted sample was mixed with 1.95 ml water and 75 μL of 5% NaNO2. After 6 min 150 μL of 10% AlCl3 was added and after another 5 min, 500 μL of 1 M NaOH was added. The absorbance was measured at a wavelength of λ = 250 nm in a spectrophotometer (Genesys 50, Thermo Fisher Scientific, Waltham, MA, United States) against a blank. Data was expressed on the base of dry weight as mg/g DW.
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7

Quantification of Hydrogen Peroxide in Basil Leaves

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Hydrogen peroxide (H2O2) was determined according to Junglee et al. (2014) (link) with some modifications. H2O2 was extracted from 0.1 g of frozen ground basil leaves with 0.4 ml of 0.1% TCA, 0.4 ml of potassium phosphate buffer (pH 7.6), and 0.8 ml of potassium iodide. After incubation for 10 min at 4°C, the samples were centrifuged at 15,000 RCF (Sorvall Legend Micro 21R, Thermo Fisher Scientific, Waltham, MA, United States) at 4°C for 10 min, and the supernatant was collected. Samples were measured in UV-cuvettes at a wavelength of λ = 350 nm in a spectrophotometer (Genesys 50, Thermo Fisher Scientific, Waltham, MA, United States) against the blank. For quantification, a calibration curve was prepared with H2O2 solutions with concentrations from 10 to 400 μmol/L. For each sample, three technical replicates were prepared. Data were expressed on the base of dry weight as mg/g DW.
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8

Acetylcholinesterase Activity Determination

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AChE
activity was determined according to the method of Bianchini et al.79 (link) The reaction mixture contained 135 μL
of distilled water, 20 μL of 100 mM potassium phosphate buffer
(pH 7.4), 20 μL of 10 Mm DTNB, 5 μL of homogenate, and
20 μL of 8 mM acetylthiocholine as the inhibitor. The reaction
mixture was observed at 412 nm using a Thermo Scientific GENESYS 50,
version 2.6 for 5 min at 15 s intervals. The AChE activity was expressed
as μmol/min/mg protein.
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9

Quantifying Fucoxanthin in Microalgae

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Acetone and methanol extracts were dried under nitrogen and resuspended in ethanol. The absorbance (Ax) was measured at 445, 663 and 750 nm by a UV–visible spectrophotometer (Genesys 50, Thermo Scientific). Fucoxanthin concentrations, expressed as mg g−1 dry weight (DW), was estimated using the following equation [79 (link)]:
where:
W = sample weight (g of dry weight)
V = ethanol volume (L)
A455, A663, A750 = absorbance at x nm
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10

Solvatochromic Polarity Determination of NADES

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The polarity of the prepared NADES was determined using solvatochromic method with Nile red, described previously in Fernandes et al. [11 (link)]. The absorbance of the samples was obtained using a UV-spectrophotometer (GENESYS 50, Thermo Scientific, Waltham, MA, USA) wavelength range of 400–800 nm. Measurements were conducted in triplicates. Polarity of BE:Gly was determined previously [12 (link)].
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