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3 protocols using anti gh2ax

1

Immunoblotting Procedures and Antibodies

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Western blotting was performed as described [19 (link), 20 (link)]. Immunoblotting experiments were carried out according to standard procedures and visualized using the ECL chemiluminescence system (Amersham/ Pharmacia Biotech).
The following antibodies were utilized: anti-CCDC6 (Abcam), anti-USP7 (Bethyl), anti-tubulin, (SIGMA-Aldrich, Inc), anti-PCNA (Millipore), anti-DNMT1 (Cell Signaling), anti-gH2AX (#05636) was from Millipore. Secondary antibodies were from Biorad, California.
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2

Immunoblotting for Cellular Signaling

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Whole-cell extracts were prepared according to standard protocols and tested by western blot using anti-GAPDH (Bethyl; dilution: 1:25,000), anti-IGFBP-1 (Santa Cruz; dilution:1:1,000), anti-phospho acetyl-coA-carboxylase (Cell Signaling; dilution: 1:2,000), anti-phospho-AMPK (Cell Signaling; dilution: 1:2,000), anti-phospho-mTOR (Cell Signaling; dilution: 1:2,000), anti-phospho-p53 (Cell Signaling; dilution: 1:2,000), anti-p21 (Santa Cruz; dilution: 1:1,000), anti-gH2Ax (Millipore; dilution: 1:1,000), anti-β-actin (Sigma; dilution: 1:10,000), anti-PKM2 (Santa Cruz; dilution: 1:1,000), anti-PDHK1 (Cell Signaling; dilution: 1:2,000), OxPhos Complex Kit (Anti-Rt/ms; Invitrogen), anti-TFAM (Calbiochem; dilution: 1:1,000) and anti-PGC1α (Abcam; dilution: 1:1,000).
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3

Chromatin Immunoprecipitation Analysis

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For each ChIP experimental condition (day 0 for pluripotency, day 3 for blood-and neural-differentiation protocols), 3 3 10 6 cells were collected and cross-linked using 1% formaldehyde. Chromatin was fragmented by sonication in buffer containing 1% NP-40 to obtain fragments of 250-500bp in length. Sonicated DNA was subjected to immunoprecipitation using anti-rabbit IgG, anti-gH2A.X, anti-pan-H2A.X (all Millipore) and anti-HA (Thermo Scientific) antibodies conjugated with Dynabeadsâ Protein G (Thermo Fisher Scientific). Immunoprecipitated DNA was further reverse cross-linked, purified and subjected to qPCR/sequencing analyses. For qPCR, sequence enrichment was calculated relative to input signal. Primers used for ChIP-qPCR are listed in Table S1.
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