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Fluoromount

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Fluoromount is a high-quality aqueous mounting medium designed for use with fluorescently-labeled biological samples. It is formulated to preserve the fluorescent signal and provide a transparent, non-fluorescing environment for microscopic imaging.

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11 protocols using fluoromount

1

Multimodal Visualization of Neurotransmitter Markers

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Selected sections at the level of the SuM were first treated with 1% H2O2 rinsed in PB mounted on SuperFrost Plus slides (Fisher Scientific) and air dried at RT. They were then processed for fluorescent RNAscope in situ hybridization according to the manufacter’s protocol (Advanced Cell Diagnostics). Briefly, sections were treated with 100% ethanol and protease III for 30 min at 40 °C. They were incubated in a solution containing both RNAscope® Probe-Mm-S1c17a6 for detection of VGLUT2 mRNA and Mm-S1c32a1-C3 for detection of VGAT mRNA. After hybridization, sections were processed for visualization using the RNA-scope Multiplex Fluorescent reagent Kit v2 (Advanced Cell Diagnostics) and the Tyramide Signal Amplification (TSA™) Plus Cyanine 3 and TSA Plus Cyanine 5 systems (Perkin Elmer).
After the RNAscope assay, sections were rinsed in KPBS and processed for immnohistofluorescent detection of the RV using the MOM kit as described above. After the overnight incubation in the mouse monoclonal antibody directed against RV (1:3000), sections were rinsed in KPBS and incubated for 2 h in Alexa488-conjugated donkey anti-mouse (1:200; Invitrogen) diluted in MOM diluent. After several rinses in KPBS, all sections were coverslipped with Fluoromount (Electron Microscopy Sciences). The specimens were analyzed with a Zeiss laser-scanning confocal microscope.
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2

Mapping Inhibitory Synapses in Mouse Hippocampus

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For labeling of PV- and CB1R-positive inhibitory synapses, P14 mice were stereotaxically injected with AAV-Cre-GFP into CA1 of the right hemisphere and AAV-RFP into CA1 of the left hemisphere. After 4 days of recovery from surgery and 4–7 days in an enriched environment or standard housing, mice were anesthetized briefly with isoflurane and decapitated. Hippocampi were rapidly dissected in ice-cold dissection media consisting of (in mM): 1 CaCl2, 5 MgCl2, 10 glucose, 4 KCl, 26 NaHCO3, 218 sucrose, 1.3 NaH2PO4∙H2O, 30 HEPES. Hippocampi were immediately drop fixed in 4% paraformaldehyde in PBS at 4°C for 2 hr followed by overnight incubation in 30% sucrose in PBS. Cryoprotected tissue was stored in Tissue-Tec O.C.T. at −20°C, sectioned at 20 μM (Leica CM1950 cryostat) and mounted on slides (Superfrost/Plus, Fisher Scientific).
For NPAS4 and inhibitory synapse immunostaining, hippocampal sections were blocked in 5% goat serum and 0.2% Triton X-100 in PBS overnight at 4°C. Sections were incubated in primary antibody overnight at 4°C in blocking solution, washed three times in PBS, and incubated overnight in a species-matched secondary at 4°C, and washed again three times in PBS. Slices were briefly dipped in ddH2O and cover slipped with Fluoromount (Electron Microscopy Sciences). See 'Key Resources Table' for antibodies and concentrations used for all IHC experiments.
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3

Cholinergic Neuron Visualization in Brain Sections

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Brains were incubated in 4% paraformaldehyde with 0.1 M phosphate-buffered saline (PBS; pH 7.4) for 24 h, 30% sucrose in PBS for 24 h, and then held in PBS (all at 4 °C). Next, 50 µm coronal sections were prepared with a vibratome and washed × 3 in PBS for 5 min. Sections were incubated in a blocking solution containing PBS with 2% bovine serum albumen and 0.2% Triton X-100 for 1 h before incubation with anti-choline acetyltransferase antibody (1:800 in blocking solution; AB144P, Millipore) overnight at 4 °C. Sections were washed × 4 in PBS for 5 min and incubated in Alexa Flour 488 antibody (1:200; A-11001, Invitrogen) for 2 h at room temperature. Following another round of washes in PBS (5 min × 4), sections were placed on a glass slide and cover-slipped with Fluoromount (Electron Microscopy Sciences) before imaging on a fluorescent microscope (Zeiss).
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4

Visualizing Developing Motor Neurons

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Four E13.5 MNs and four E17.5 MNs were stained during the whole-cell recordings with pipettes containing neurobiotin (0.4%, CliniSciences, Montrouge, France) diluted in the intracellular medium. After the recording session, during which the MNs were injected with neurobiotin, the entire brainstem-spinal cord preparation was fixed in 4% paraformaldehyde (PFA) for 2 h at room temperature. The preparation was then rinsed three times with 0.1 M phosphate-buffered saline (PBS) and incubated with streptavidin-Cy3 (1:400, Life Technologies SAS, Saint-Aubin, France) overnight at 4 °C in 0.1 M PBS containing 0.2% bovine serum albumin (Sigma Aldrich, St. Louis, MO, USA) and 0.3% Triton X-100 (Sigma). To confirm that the injected neurons were MNs, a mouse monoclonal antibody against Islet-1/2 (1/100, Developmental Studies Hybridoma Bank), a marker of developing MNs59 (link), was added to the incubation medium (data not shown). The preparation was incubated with Alexa Fluor 488 goat anti-mouse IgG (H + L) (1:400, Life Technologies SAS) for 2 h at room temperature, abundantly rinsed in 0.1 M PBS, and finally mounted with anti-fade reagent (Fluoromount, Electron Microscopy Sciences, PA, USA). Figure 1A,B illustrate representative neurobiotin-injected E13.5 and E17.5 MNs.
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5

Fluorescent Amyloid Plaque Visualization

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Spinophilin immunostained sections were overstained with 6-CN-PiB (a
highly fluorescent derivative of PiB) to reveal amyloid plaque pathology as
described previously (Ikonomovic et al.,
2008
). Briefly, sections were incubated in 10-mM 6-CN-PiB for 45
minutes, dipped 3 times in potassium phosphate buffer (0.1-M, pH 7.4),
followed by a 1-minute differentiation in potassium phosphate buffer, then
coverslipped with Fluoromount (Electron Microscopy Services, Hatfield,
PA).
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6

Permeability of Multicellular BBB Organoids

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Multicellular BBB organoid arrays were formed for 48 h and were incubated with 100 μg/mL FITC or 100 μg/mL FITC-Dextran of different molecular weight (3, 4, 40 and 70 kDa, Sigma-Aldrich and ThermoFisher Scientific) in Organoid Medium for 4 h at 37 °C with 5% CO2. Organoids were washed 3 times with PBS, and fixed in 4% PFA for 30 min at room temperature. The organoids were transferred to Eppendorf protein LoBind tubes and stained with DAPI (1 μg/mL, Sigma-Aldrich). Finally, organoids were washed with washing buffer (0.1% Triton-X in PBS), transferred to cover glasses, and mounted with Fluoromount (Electron Microscopy Science). Organoids were imaged using a Leica SP5 confocal microscope using an HCX PL APO CS 40×/1.3 oil objective (Leica). The organoid core was defined as the volume starting at 25 μm depth from the bottom of the organoid as visualized in an orthogonal cross-section. Z-stacks covering a total depth of 3.5 μm were acquired for quantification. Quantification of organoid permeability to FITC-dextran was performed using a custom-made automated Fiji [32 (link)] script that segments individual organoids and measures the mean fluorescence intensity of the maximum intensity projection within 75% of the cross-section area at the spheroid core. The code for the script is available at https://github.com/phagozyt/Fiji/blob/fb365d7c1275a6b013dc32b982504dfef9653d42/MIP75ROI.
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7

Immunohistochemistry and Immunofluorescence Protocols

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Volumes of 40 µL of noncentrifuged CSF or 40 µL of resuspended CSF pellets (centrifuged 6 times at 700 × g for 10 min and resuspended each time with PBS) were extended in slides and air dried. They were then fixed with acetone for 10 min at 4 °C to carry out the immunohistochemistry. For lymph node samples, sections were deparaffinized in xylene and an antigen retrieval step was applied with 10 mM sodium citrate buffer (pH = 6.0) heated to 100 °C for 40 min. For the cell culture, macrophages were washed with Dulbecco’s PBS (DPBS; GIBCO) and fixed in 4% paraformaldehyde in PBS for 15 min.
Immunofluorescence was performed as follows: samples were rehydrated with PBS and then blocked and permeabilized with 1% BSA in PBS (Sigma-Aldrich) (blocking buffer [BB]) with 0.1% Triton X-100 (Sigma-Aldrich) for 20 min. They were then washed with PBS and incubated with the primary antibody overnight at 4 °C. Next, samples were washed and incubated for 1 h at room temperature with the secondary antibody. Nuclear staining was performed with Hoechst (2 μg/mL, H-33258, Fluka) and samples were washed and coverslipped with Fluoromount (Electron Microscopy Sciences) or ProLong Gold (Thermo Scientific). Staining controls were performed by incubating with BB instead of the primary antibody. In double staining, controls for cross-reactivity of the antibodies were also performed.
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8

Immunofluorescent Staining of Mouse Retina

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Staining of mouse retina was performed as described (Li et al., 2013 (link)). Cryosections of mouse retinas fixed in 4% paraformaldehyde were permeabilized and blocked using 5% normal goat serum followed by incubation with primary antibody overnight at 4°C. Slides were then washed three times with phosphate buffered saline and further incubated with secondary antibody for 1 h at room temperature. Hoechst 33342 (Life Technologies) was added (1 µg/ml) to label the nuclei and the sections were then mounted (Fluoromount; Electron Microscopy Services, Hatfield, PA) under glass coverslips and visualized using Leica TCS Sp5 II laser microscope (Leica Microsystems).
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9

Cresyl Violet Staining and Immunocytochemistry of Brain Sections

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Brains were sectioned coronally (50 μm thick) using a vibratome (Leica) and collected
in 12-well plates. Immunocytochemistry was performed on every 12 th tissue
section. Sections were mounted onto glass slides and dried overnight at ambient
temperature. They were then deparaffinized with xylene, hydrated in descending
concentrations of ethanol, rinsed in water, and immersed in 0.5% cresyl violet for
3 hours. After dehydration in ascending ethanol and xylene, the slides were cover
slipped with DEPEX Mounting Media (Electron Microscopy Sciences). Sections were
incubated with 0.01 M sodium citrate, pH 9.0 in an 80° C water bath for 3 hours for
antigen retrieval followed by blocking (PBS, 0.05% BSA, 2% FBS, 1% Triton X-100, and
0.1% saponin). Primary antibodies for profilin1 (1:1000, Sigma), anti-Map2 (1:500;
Millipore), anti-Ctip2 (1:500; Abcam), and anti-Cry-mu (1:200; Atlas Antibodies) were
applied and incubated overnight at 4° C. Secondary antibodies (i.e., 1:500, Alexa-Flour
488 or 647; Invitrogen) were applied in blocking solution for 2 hours at room
temperature in the dark. Sections were mounted and cover slipped with Fluoromount
(Electron Microscopy Sciences). Quantification of pixel (DAB induced brown colour) was
analysed by ImageJ.
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10

Immunohistochemistry of Frozen Hippocampal Sections

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For the immunohistochemistry, the frozen hippocampal sections (6 µm thick), stored at −80 °C, were air dried for 10 min and then fixed with acetone for 10 min at 4 °C. After 2 h of drying, sections were rehydrated with phosphate-buffered saline (PBS) and then blocked and permeabilized with 1% bovine serum albumin in PBS (Sigma-Aldrich) (Blocking buffer, BB) with 0.1% Triton X-100 (Sigma-Aldrich) for 20 min. They were then washed with PBS and the primary incubation was overnight at 4 °C. Next, the slides were washed and incubated for 1 h at room temperature with the secondary antibody. Nuclear staining was performed with Hoechst (2 μg/mL, H-33258, Fluka, Madrid, Spain) and the slides were washed and coverslipped with Fluoromount (Electron Microscopy Sciences, Hatfield, PA, USA). Staining controls were performed by incubating the secondary antibody after the incubation with BB instead of the primary antibody. In double stainings, controls for cross reactivity of the antibodies were also performed.
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