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6 protocols using anti fibronectin ab2413

1

Modulation of ER Stress Pathways

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The ER stress activators thapsigargin (TG) and tunicamycin (TM) were purchased from Sigma-Aldrich; Merck KGaA and Beijing Solarbio Science & Technology Co., Ltd., respectively. The ER stress inhibitors 4-phenylbutyric acid (PBA) and sodium tauroursodeoxycholate (TUDCA) were purchased from Sigma-Aldrich; Merck KGaA. TM, TG, PBA and TUDCA were dissolved in dimethyl sulfoxide (DMSO; Leagene). Anti-glucose-regulated protein 78 kDa (GRP78; ab12223), anti-activating transcription factor (ATF)6 (ab11909), anti-phosphorylated eukaryotic initiation factor 2α (p-IRE1α; ab48187), anti-E-Cadherin (ab40772), anti-fibronectin (ab2413) and anti-α-SMA (ab32575) primary antibodies were purchased from Abcam. Horseradish peroxidase-conjugated anti-p-eIF2α (119A11), horse anti-mouse and horse anti-rabbit secondary antibodies, Alexa Fluor 488-conjugated goat anti-rabbit and Alexa Fluor 488-conjugated goat anti-mouse secondary antibodies were purchased from Cell Signaling Technology, Inc. Anti-ATF4 primary antibody (sc-390063) was purchased from Santa Cruz Biotechnology, Inc. Primary antibodies against vimentin (10366-1-AP), β-actin (66009-1-Ig) and Neural cadherin (N-cadherin; 22018-1-AP) were purchased from ProteinTech Group, Inc.
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2

Immunoblotting Analysis of Cellular Proteins

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Cells or tissues were collected/homogenized and lysed on ice in an RIPA buffer (25 mM Tris–HCl, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP-40 and 5% glycerol) with protease inhibitors (#88660SPCL, Thermo Fisher Scientific) and a phosphatase inhibitor mix (sc-45044, Santa Cruz). Immunoblotting was performed by probing with the following antibodies: anti-Nox4 (sc-30141), anti-Lamin (sc-376248) and anti-HuR (sc-5261) from Santa Cruz; monoclonal anti-GAPDH (G8795) from Sigma; and anti-fibronectin (ab2413) and anti-SMA (ab5694) from Abcam.
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3

Antibody Selection and Chemical Treatments for Metabolic Regulation

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The following commercial antibodies were used in our study. Anti-ADIPOR1 (ab126611), anti-AMPKα1 (ab32047), anti-collagen I (ab34710), and anti-fibronectin (ab2413) were obtained from Abcam. Anti-phospho-PERK (Thr980) (3179), anti-phospho-AMPKα (Thr172) (2535), anti-CHOP (2895S), anti-GRP78 (3177S), and anti-cleaved caspase 3 (9661S) were purchased from Cell Signaling Technology. Anti-PERK (AF5304) and anti-Bcl-2 (AF6139) were from Affinity. Anti-CHOP (GB34710) was from Servicebio. Anti-BAX (60267-1-Ig) and anti-β-actin (60008-1-Ig) were obtained from Proteintech. All secondary antibodies used for western blot analysis were purchased from Abcam. AdipoRon was from SELLECK. AICAR, compound C, and TUDCA (S3654) were also purchased from SELLECK.
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4

Western Blot Analysis of Cellular Proteins

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The protein concentration was measured using a Pierce BCA Protein Assay Kit (23227, Thermo Fisher Scientific). Approximately 10 μg of protein from each cell was subjected to 8% to 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred onto a nitrocellulose membrane. The membranes were blocked with 3% bovine serum albumin solution in TBST, followed by 1 h incubation. After that, the membrane was incubated with primary antibody at 4 °C overnight. The primary antibodies used to probe each protein were as follows: mouse anti-phosphoSmad2/3 (8828, Cell Signaling, Danvers, MA, USA): 1:1000, rabbit anti-Smad2/3 (8685, Cell Signaling): 1:1000, anti-fibronectin (ab2413, Abcam): 1:1000, mouse anti-β-actin (4967, Cell Signaling): 1:1000, mouse anti-phospho-histone H2A.X (05-636, Merck): 1:1000, rabbit anti-cleaved caspase3 (9664, Cell Signaling): 1:1000, rabbit anti-caspase3 (9662, Cell Signaling): 1:1000, rabbit anti-p62 (610832, BD Bioscience, Franklin Lakes, NJ, USA): 1:500 and rabbit anti-LC3 (NB100-2331, Novus Biologicals, Centennial, CO, USA): 1:1000. Secondary horseradish peroxidase (HRP)-conjugated antibodies (G21040, G21234, Invitrogen): 1:2000. The antibody binding was detected using an enhanced chemiluminescence (ECL) detection kit (RPN2106, GE Healthcare Life Science).
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5

Sorafenib Signaling Pathway Analysis

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Anti-cleaved PARP (#9541), anti-LC3 (#12741) anti-p-cdc2 (#4139), anti-cyclin B (#4138), anti-vimentin (#3932), and anti-β-actin (#3700) were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-fibronectin (ab2413) was purchased from Abcam (Cambridge, UK). Sorafenib tosylate (marketed as Nexavar by Bayer, Leverkusen, Germany) was purchased from Selleckchem (Houston, TX, US). For in vitro experiments, sorafenib was dissolved in dimethyl sulfoxide to generate a 20 mmol/L stock solution, which was stored at 4 °C until use.
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6

Acute Aristolochic Acid-Induced Nephropathy Model

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The aristolochic acid I sodium salt used to generate mouse model of acute AAN was purchased from Sigma (St. Louis, MO, USA). The recombinant mouse IL-22 was obtained from Novoprotein (Shanghai, China) and the recombinant human IL-1Ra was kindly provided by General Regeneratives Limited (Shanghai, China). The primary and secondary antibodies used for immunoblot analysis were as follows: anti-Fibronectin (ab2413) and anti-Collagen IV (ab6586) from Abcam (Cambridge, Massachusetts, USA); anti-α-Smooth Muscle Actin (α-SMA) (14968), anti-Vimentin (D21H3) (5741), anti-NLRP3 (15101), anti-Cleaved Caspasse-1 (67314), anti-IL-1β (12242), and anti-β-actin (8H10D10) (3700) from Cell Signaling Technology (Danvers, MA, USA); peroxidase-conjugated goat anti-rabbit and anti-mouse immunoglobulin G (IgG) from Jackson ImmunoResearch Laboratory (West Grove, PA, USA). The primary and secondary antibodies used for immunohistochemical staining of NLRP3 were as follows: anti-NLRP3 (GB11300) and HRP-conjugated goat anti-rabbit IgG (GB23303) from Servicebio Technology Co. Ltd. (Wuhan, China).
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