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32 protocols using ab26300

1

Lamin Immunostaining and DNA FISH

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Previously fixed coverslips were subjected to two washes with 1× PBS (5 min each). Blocking was performed for 30 min using 1 % bovine serum albumin (BSA) in 1× PBS at RT. Primary antibodies used were as follows: Mouse anti-Lamin B2 (Abcam (ab8983), 1:600) and Rabbit anti-Lamin A (Abcam (ab26300), 1:500). Antibody dilutions were prepared in 0.5 % BSA in 1× PBS and incubated for 90 min at RT. Secondary antibodies used were goat anti-mouse IgG–Alexa 633 (Invitrogen (A-21052) 1:1000) and goat anti-rabbit IgG–Alexa 488 (Invitrogen (A-11034) 1:1000) for 1 h at RT. Post fixation and post permeabilization were subsequently performed with 4 % PFA (5 min RT) and 0.5 % Triton X-100 in 1× PBS (5 min RT), respectively. This was followed by two washes each with 1× PBS (5 min each) and 50 % FA/2× SSC (pH 7.4). The probe for ZNF570 was equilibrated at 37 °C for 5 min followed by denaturation at 80 °C for 5 min and quick chilled on ice for 2 min. Pre-annealing was performed at 37 °C for 30–40 min. This denatured probe (3–4 μL) was spotted onto the fixed cells that were subjected to immunostaining for Lamin A and Lamin B2 and subjected to co-denaturation at 80 °C for 5 min. Hybridization was for 48 h in a humidified box at 37 °C.
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2

Quantitative Western Blot Analysis

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Western blot (WB) was carried out as our previous method.44 (link), 45 (link), 55 (link) The following primary antibodies were applied: Ser536p‐NF‐κB p65 (Cat. No.: #3033), NF‐κB p65 (Cat. No.: #8242), Ser473p‐Akt (Cat. No.: #4060), Akt (Cat. No.: #9272), Bax (Cat. No.: #2772), cleaved caspase‐3 (Cat. No.: #9664) (1:1000, CST, Danvers, MA, USA), Bcl‐2 (Cat. No.: ab59348, 1:500, Abcam), Tyr607p‐PI3K (Cat. No.: ab182651, 1:1000, Abcam), and PI3K (Cat. No.: BSM‐33219 M, 1:1000, Bioss, Beijing, China). β‐actin (Cat. No.: ab8227, 1:1000, Abcam) and Lamin A (Cat. No.: ab26300, 1:3000, Abcam) were employed as the internal reference. WB protein bands were quantified by ImageJ software (National Institutes of Health, Baltimore, MD, USA). Protein expression levels were indicated by the ratio of interest protein bands to that of β‐actin or Lamin A bands.
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3

Immunostaining of Nuclear Pore Proteins

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For all immunostainings, primary antibodies (Abcam) used were rabbit anti-Nup358 at 1:200 (ab64276); rabbit anti-Nup214 at 1:200 (ab70497); mouse anti-Nup62 at 1:300 (ab96134); rabbit anti-Nup153 at 1:300 (ab171074); rabbit anti-TPR at 1:100 (ab170940); rabbit anti-lamin A at 1:200 (ab26300). Secondary antibodies: the secondary antibodies used were anti-mouse Cy3 (ab97035), anti-rabbit Cy3 (ab6939; Abcam), Alexa Fluor 647 goat anti-mouse (A21235), and Alexa Fluor 594 goat anti-rabbit (A11072; Molecular Probes).
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4

Immunofluorescence Staining of Exosome Markers

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Cells were plated at a density of 2 × 104 cells onto glass coverslips in six-well plates, placed back into the incubator, and allowed to grow for 48 to 72 hours. The growth medium was removed, and the cells were washed once with PBS and subsequently fixed with 3.7% formaldehyde for 15 min at RT. Cells were then permeabilized with 0.1% Triton X-100 for 5 min, washed two times, and blocked with 10% normal goat serum for 1 hour at 37°C. Primary antibodies CD63 (ab1318, Abcam), CD9 (ab97999, Abcam), CD81 (ab35026, Abcam), and Lamin A (ab26300 and ab8980, Abcam) were diluted in 1% normal goat serum and applied for 2 hours at 37°C. Primary antibodies were removed, cells were washed three times for 5 min with PBS, and incubated with Alexa-conjugated secondary antibodies diluted in Dulbecco's PBS for 1 hour at 37°C. Secondary antibodies were removed, coverslips were washed three times for 5 min, and mounted onto glass slides using Vectashield Hardset with DAPI (H-1500, Vector Labs). Images were acquired using a Zeiss LSM 710 confocal microscope with a 63× objective.
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5

Automated Nuclear Volume Measurement

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Nuclear volume measurements were made by staining cells for Lamin A (Abcam, ab26300) and Hoechst 33342. Images were acquired with an Olympus FV3000 NIR and a 100× oil objective, with confocal Z-stacks with a step size of 0.4 µm. The two fluorescent channels were merged using maximal pixel intensity in Fiji. Nuclear volume was then measured from the merged Z-stacks using surface creation in Imaris with local thresholding.
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6

Immunofluorescence Staining of Cellular Markers

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Cells were fixed in 4% paraformaldehyde (15 minutes, room temperature) before permeabilization in PBS supplemented with 0.1% triton X-100 (Sigma) (5 minutes, room temperature). They were then blocked during 30 minutes at room temperature using PBS with 1% BSA (Sigma-Aldrich, St. Louis, USA). The primary antibodies used are: Mouse anti-MITF (1:100, M362129-2, Dako), Rabbit anti-lamins A/C (1:200, ab26300, Abcam), Mouse anti-NKI (1:100, ab34165, Abcam), Mouse anti-TYRP1 (1 :500, LSC39939)were incubated for one hour at room temperature in blocking buffer. Cells were stained with the species-specific fluorophore-conjugated secondary antibody (Invitrogen) (one hour, room temperature) and nuclei were visualized with Hoechst 33342 (Invitrogen).
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7

Chromatin Remodeling Protein Analysis

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H3 general (ab1791, Abcam), H3.3 (09-838, Millipore), H3.1/2 (ABE154, Millipore), H4 (rabbit antiserum), H3K9me3 (ab8898, Abcam), Hira (mouse monoclonal WC15 and WC119), DAXX (sc-7152, Santa Cruz Biotechnology), ATRX (sc-15408, Santa Cruz Biotechnology), KAP1 (ab22553, Abcam; ab10483, Abcam), Tubulin (TUB2.1, Sigma), Lamin (ab26300, Abcam), normal rabbit IgG (12-370, Millipore).
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8

Western Blot Analysis of RNF87 in Spinal Cord

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Spinal cord tissues from 14 cases and 14 controls, including 3 samples in microarray analysis, were lysed in ice-cold RIPA buffer (Solarbio, R0010, China) with 1 mM phenylmethanesulfonyl fluoride (PMSF). After quantification using the BCA method, proteins were electrophoresed on 10% SDS-polyacrylamide gels and transferred to polyvinylidene difluoride (PVDF) membrane (Millipore, USA). The membranes were blocked with 5% non-fat milk in PBST containing 0.1% Tween-20 for 60 min and incubated with primary rabbit anti-RNF87 (TRIM4) (ab26300, 1:800, Abcam, Cambridge, UK) and a mouse anti-GAPDH antibody (sc-365062, 1:10000, Santa Cruz Biotechnology) overnight at 4 °C, followed by incubation with secondary polyclonal goat anti-rabbit HRP-conjugated (ZDR-5306, 1:2000, ZSGB-bio, Beijing, China) or polyclonal goat anti-mouse HRP-conjugated antibody (ZDR-5307, 1:2000, ZSGB-bio, Beijing, China) for 2 h at room temperature. Signals were visualized using enhanced chemiluminescence (ECL, Millipore, USA) reagents. Optical density values of each protein divided by the loading control (GAPDH) were regarded as the relative density of each protein.
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9

Immunostaining of Lamin A/C and B1

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Primary Anti-Lamin A (rabbit polyclonal, ab26300, Abcam Ltd., Cambridge, UK) and secondary Goat Anti-rabbit Alexa 488 (Molecular Probes, Waltham, MA, USA) antibodies were used for immunohistochemical analysis of lamin A/C at a dilution of 1:200 and 1:500 respectively in 4%BSA/4× SSC blocking solution. Primary Anti-Lamin B1 (rabbit polyclonal, ab16048, Abcam Ltd. UK) and secondary Goat Anti-rabbit Cy3 (AP187C, Sigma Chemical, St. Louis, MO, USA) antibodies were used for immunohistochemical analysis of lamin B1 at a dilution of 1:200 and 1:500 respectively in 4%BSA/4× SSC blocking solution. The cells were fixed in 3.7% formaldehyde/1× PBS and permeabilized with 0.1% Triton-X 100. 1× PBS washes were performed to wash the solutions off. Slides were then incubated with primary antibody for 45 min at 37 °C, humidified atmosphere. 1× PBS washes were performed to wash away the extra primary antibody. Incubation with secondary antibody was performed for 30 min at 37 °C, humidified atmosphere. 1× PBS washes were performed to wash away the extra antibody. DNA of the nuclei was counterstained with DAPI. Vectashield was used as mounting medium to prevent photo-bleaching of the sample.
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10

Isolation and Imaging of Peripheral Blood Leukocytes

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Peripheral blood was obtained from healthy donors who signed informed consent according to the institutional approval of University of Manitoba’s Health Research Ethics Board Protocol (#HS14085(H2011:336)). White blood cells were isolated using Ficoll-gradient centrifugation. Blood was mixed with PBS 3.5:1 and added to a Ficoll in 1.5:1 ratio and centrifuged (210 g, 30 min). The buffy-coat was collected, washed once in a PBS and re-suspended in the same RPMI-1640 medium as used for HL cells, but supplemented with 10% FBS. Cells were cultured in 37 °C for 72 h, placed onto poly-L-lysine-coated slides and fixed as described for HL cells. Lamin A/C was labelled via 1 h incubation with 1:250 rabbit antibody (ab26300, Abcam, UK) followed by 1 h incubation with Alexa647 antibody (A-31573, Thermo-Fisher, Canada).
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