The largest database of trusted experimental protocols

12 protocols using anti α synuclein

1

Quantitative Immunoblot Analysis of Signaling Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extracts from tumor tissues and cells were prepared in radioimmunoprecipitation assay (RIPA) buffer containing protease inhibitors (Sigma-Aldrich). Protein samples were separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis and transferred onto nitrocellulose membranes. Primary antibodies (1:500 dilution) used here are as follows: anti-Akt, anti-Akt (ser473), anti-mTOR, anti-phospho-mTOR (Ser2448), anti-phospho-p70S6K1 (Thr389), anti-p70S6K1, anti-phospho-4EBP (Thr37/46), anti-4EBP (Cell Signaling Technology, Beverly, MA, USA), anti-α-synuclein (Abcam, Cambridge, MA, USA), and anti-β-actin (Sigma-Aldrich). Blots were developed with an enhanced chemiluminescence system (GE Healthcare Biosciences, Piscataway, NJ, USA). Densitometric analysis of the blots were performed using the Quantity One software (Bio-Rad Laboratories, Richmond, CA, USA).
+ Open protocol
+ Expand
2

Comprehensive Antibody Panel for Alzheimer's Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
anti-Aβ/APP 4G8 (mouse mAb, Covance), anti-Aβ/APP 6E10 (mouse mAb, Covance), anti-AβOs scFvA13 and scFvIm3 (ref. 13 (link)), anti-oligomer A11 (ref. 21 (link)) (rabbit pAb Millipore), anti-Aβ (rabbit mAb, Cell Signaling), anti α-Synuclein (mouse mAb, Abcam), anti-APP C-terminal fragment (rabbit pAb, Sigma), anti-APP N-terminal 22C11 (mouse mAb, Millipore), anti-V5 (mouse mAb Invitrogen, and rabbit pAb Sigma), anti-V5-HRP (mouse mAb, Sigma), anti-His tag (mouse mAb Millipore), anti-KDEL (mouse mAb, Assay Design/Stressgen) (kind gift of Prof. R. Sitia, HSR San Raffaele, Milan), anti-mTOR (rabbit pAb, Cell Signaling), anti-phospho-mTOR (rabbit pAb, Cell Signaling), anti-P70S6K (rabbit pAb, Cell Signaling) (kind gift of Dr G. Amadoro, CNR, Rome), anti-phospho-P70S6K (rabbit pAb, Cell Signaling), anti ERK1/2 (rabbit pAb, Cell Signaling), anti phosho-ERK1/2 (rabbit pAb, Cell Signaling), anti phospho-CREB (rabbit pAb, Cell Signaling), anti β-Actin (mouse mAb and rabbit pAb, Sigma), anti-calnexin (rabbit pAb, Sigma), anti-GM130 (mouse mAb, Covance), anti-Golgi 58K (mouse mAb, Sigma), anti-Rab3A (mouse mAb, Sigma), anti-Rab5 (rabbit pAb, Abcam), anti-Rab7 (goat pAb, Santa Cruz), anti-TGN46 (rabbit, pAb), anti-LAMP-1 (rabbit pAb, Abcam). anti-Rab5, anti-Rab7, anti-TGN46 are kind gift of Dr V. Triaca, CNR, Rome.
+ Open protocol
+ Expand
3

Quantitative Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The bicin-choninic Acid (BCA) Protein Assay Kit (CW2011S, CWBIO, Beijing, China) was used to calculate protein concentration. The loading buffer was added to the protein supernatant, which was collected as described in the ELISA test protocol, heated for 5 min (95 °C), loaded on 10% acrylamide–SDS gel (P0056B, Shanghai, China), and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The molecular weight of the protein was marked by a protein marker (26616, Thermo, Waltham, MA, USA). The membrane was blocked with 5% skim milk in TBST for 2 h at room temperature. Primary antibodies anti-α-synuclein (Abcam, ab155038, Cambridge, UK), anti-olig2 (CST, 17198, Boston, MA, USA), anti-Iba1 (CST, ab109186, Boston, MA, USA), and anti-β-actin (Bioss, bs-0061R, Beijing, China) were incubated overnight at 4 °C and washed. Species-appropriate, HRP-conjugated secondary antibodies were incubated for 1 h at room temperature and washed three times. Enhanced chemiluminescence reagents reacted with HRP, and the signal intensity value was read by the ultra-sensitive chemiluminescence system (Fusion FX.EDGE, VILBER Smart Imaging, Paris, France). The integrated density ratio of α-synuclein: β-actin represents the expression level of α-synuclein, as do the olig2 and Iba1.
+ Open protocol
+ Expand
4

Western blot and immunoprecipitation of brain proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dissected mouse brain tissues were lysed in RIPA buffer and the protein homogenates were then separated by SDS-PAGE and transferred onto a polyvinylidene fluoride membrane. After blocking, the membranes were incubated overnight with primary antibodies, followed by washing and incubation with horseradish peroxidase conjugated secondary antibody for 1 h. Immunoreactive bands were then visualized using the ECL reagent (WBKLS0100, Merck Millipore). The densities of the immunoblotting bands were semiquantified using Image J software (National Institutes of Health). The primary antibodies used were as follows: anti-tyrosine hydroxylase (TH) (#T2928, Sigma), anti-α-synuclein (#ab1903, Abcam), anti-SIRT1 (#07–131, Millipore), anti-p62 (#18420–1-AP, Protein Tech Group), anti-LC3B (#18725–1-AP, Protein Tech Group), anti-acetyl-Lysine (#05–515, Millipore), anti-caspase-3 (#9662, CST), and anti-GAPDH (#10494–1-AP, Protein Tech Group).
For immunoprecipitation, extracted proteins were incubated with anti-LC3B (#3868, CST) at 4°C overnight with rotation, followed by precipitation with protein A agarose beads (P2012, Beyotime). Immunoprecipitates were then washed and subjected to SDS-PAGE separation. Subsequent immunoblotting procedures were the same as described above.
+ Open protocol
+ Expand
5

Immunofluorescence Staining of Neuronal Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded on matrigel-coated glass coverslips and they were fixed for 20 min in ice in 4% paraformaldehyde (PFA, Sigma), solution in phosphate-buffered saline (PBS, Euroclone). Then, cells were permeabilized for 30 min in a blocking solution, containing 0.5% Triton X-100 (Sigma-Aldrich) and 10% donkey serum (Sigma-Aldrich), and incubated overnight at 4 °C with the primary antibodies in a blocking solution. Then, cells were washed with PBS and incubated for 1 h at room temperature with Hoechst and with secondary antibodies. The following antibodies were used: anti-OCT4 (1:100, Abcam), anti-NANOG (1:100, Abcam), anti-FOXA2 (1:300, Abcam), anti-NESTIN (1:300 Millipore), anti-TH (1:200, Immunological Sciences), anti-MAP2 (1:500, Immunological Sciences), anti-TOMM20 (1:300, Novus), anti-α-Synuclein (clone LB509, 1:100, Thermo), anti-GFP (1:500, Thermo), anti-α-Synuclein (phosphoS129, 1:300, Abcam), anti-TAU (1:500, Millipore), anti-LAMP1 (1:500, Abcam), anti-Synapsin-1 (1:500, Synaptic Systems), anti-SMI311 (1:500, BioLegend), anti GM130 (1:300, BD), anti-GRIM19 (1:300, Abcam). All the secondary antibodies used for the immunofluorescence staining are Alexa FluorTM.
+ Open protocol
+ Expand
6

Molecular Mechanisms in Neurodegenerative Diseases

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the experiments, we used the following materials: culture media (Gibco-Thermo Fisher Scientific, Waltham, MA, USA); fetal bovine serum and minimum essential medium with Earle’s salt (EuroClone Life Science, Pero, MI, Italy); penicillin/streptomycin and RIPA buffer (Sigma-Aldrich, St. Louis, MO, USA); a protease inhibitor cocktail (Roche, Basilea, Switzerland); Quick Start™ Bradford Dye Reagent and Clarity™ Western ECL Blotting Substrates; iScriptTM cDNA synthesis, retro-transcription kit (BioRad, Segrate, MI, Italy); ReliaPrep™ Miniprep RNA Extraction System and GoTaq qPCR Master Mix (Promega, Madison, WI, USA); SYBR Green (Takara, Kyoto, Japan); and synthetic oligonucleotides from Eurofins Genomics (Edersberg, Germany). The primary antibodies used were as follows: anti-Nrf2 (ElabScience, Houston, TX, USA), anti-β-Actin (Sigma-Aldrich, St. Louis, MO, USA), anti-Tfeb (ab2636, Abcam, Cambridge, UK), anti-α-synuclein (ab138501 Abcam, Cambridge, UK), and anti-LAMP2 (Santa Cruz Biotechnology, Dallas, TX, USA). The secondary antibodies were purchased from Jackson Laboratories (Bar Harbor, ME, USA). The secondary antibodies for immunofluorescence were as follows: Alexa Fluor 488 and Alexa Fluor 546; these were purchased from Thermo Fisher, and the Human MDA (Malondialdehyde) ELISA Kit was purchased from Fine Test, Labospace (Milan, MI, Italy).
+ Open protocol
+ Expand
7

Protein Expression Analysis in Mouse Brain

Check if the same lab product or an alternative is used in the 5 most similar protocols
After the mice were sacrificed at the indicated time point, the distal colon and the middle brain substantia nigra were rapidly removed and lysed in RIPA lysis buffer (50 mM Tris–HCl, pH 8.0; 1% NP-40; 0.5% sodium deoxycholate; 150 mM NaCl; 0.1% SDS) containing protease and phosphatase inhibitor cocktails and 1 mM phenyl-methylsulphonyl fluoride (PMSF). Equal amounts of protein (30 μg) were loaded per lane and separated by 10% SDS-PAGE. Proteins in the gels were transferred to immobilon polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with 3% BSA and incubated with primary antibody overnight at 4°C (anti-α-synuclein, Abcam, 1:1,000; anti-TH, Santa Cruz, 1:500; anti-phospho-α-synuclein (phospho S129), Abcam 1:100; anti-MyD88, Cell Signaling, 1:1,000; anti-NF-κB, Santa Cruz, 1:1,000; anti-β-actin, Sigma, 1:5,000) followed by secondary antibodies conjugated to horseradish peroxidase (Santa Cruz Biotechnology, CA, USA) and visualized using chemiluminescent detection methods (Amersham Company).
+ Open protocol
+ Expand
8

Striatum Protein Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Striatum was homogenized in RIPA buffer containing protease and phosphatase inhibitors (1 mM sodium orthovanadate, 1 mM aprotinin, and 1% protease inhibitor cocktail) and centrifuged at 10000g for 10 minutes at 4°C. Supernatants were used for western blotting, as described in da Rosa-Junior.33 (link) The following primary antibodies were used: anti-phospho-JNK and anti-JNK were purchased from R&D Systems, Minnesota; anti-Bok, anti-Bcl-xL, anti-caspase-9, anti-caspase-3, anti-cleaved caspase-3, anti-phospho-p38, anti-p38, anti-phospho-ERK1/2, and anti-ERK1/2 from Cell Signaling, Massachusetts; anti-superoxide dismutase 1 (SOD1), anti-heme oxygenase-1 (HO-1), and anti-α-synuclein from Abcam, Cambridge, UK; anti-catalase (CAT) was from Merk Millipore, Massachusetts; anti-GSK-3β from Santa Cruz Biotechnology, Texas; anti-β-actin from Sigma-Aldrich, Missouri.
+ Open protocol
+ Expand
9

Hippocampal Protein Analysis via Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hippocampus blocks (~100 mg) were harvested, immediately soaked in liquid nitrogen, smashed into power, dissolved in SDS lysis buffer (50 mM Tris-HCl, pH7.0, 2% SDS, 6% glycerol, 100 mM DTT) containing a protease inhibitor mixture, and subjected to SDS-PAGE. The protein bands were transferred to an Immun-Blot PVDF membrane (Bio-Rad). Western blot analyses were performed as described previously (Baker et al., 2015 (link)). Antibodies used for western blot including anti-α-synuclein (1:1000) and anti-β-amyloid (1:1000) were purchased from Abcam. The anti-Parkin (Prk8) (1:1000) and anti-SQSTM1/p62 (1:1000) antibodies were purchased from Cell Signaling Technology. The anti-β-actin (1:2000) antibody was purchased from Santa Cruz Biotechnology.
+ Open protocol
+ Expand
10

Monoclonal and Polyclonal Antibodies for Research

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following monoclonal antibodies were purchased: anti-HSP70, anti-p-ERK, and anti-α-synuclein (Abcam); anti-GAPDH (Santa Cruz Biotechnology); anti-VHR (BD Biosciences); anti-HA (Roche); anti-Aβ (BioLegend); anti-NeuN (Merck Millipore); anti-HSP70, anti-GST, anti-cleaved caspase-3, anti-Bak, and anti-Bax (Cell Signaling Technology). The following polyclonal antibodies were also obtained: anti-PSD95 (Abcam); anti-HSP70, anti-VRK3, anti-VHR, anti-p-ERK, anti-ERK, and anti-His (Cell Signaling Technology); anti-VRK3 (Atlas antibodies); anti-HA (YPYDVPDYA; Bethyl Laboratories); anti-FLAG (D-8), anti-Lamin B, and anti-MAP2 (I-18) (Santa Cruz Biotechnology).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!